Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28724 | 5' | -47.8 | NC_006146.1 | + | 685 | 0.66 | 0.999492 |
Target: 5'- aGAUGGCGCaAGAUGAUUGUUU-GCGUCg -3' miRNA: 3'- -UUGCUGCG-UUUGUUAGUAGAaCGCGG- -5' |
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28724 | 5' | -47.8 | NC_006146.1 | + | 22462 | 0.7 | 0.989885 |
Target: 5'- gGACGAUGCcuGCAccagAUCAUacaGCGCCu -3' miRNA: 3'- -UUGCUGCGuuUGU----UAGUAgaaCGCGG- -5' |
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28724 | 5' | -47.8 | NC_006146.1 | + | 32061 | 0.67 | 0.999199 |
Target: 5'- gGGCGugGCGAGCAucgGUCAgCUgaccaaaUGUGCa -3' miRNA: 3'- -UUGCugCGUUUGU---UAGUaGA-------ACGCGg -5' |
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28724 | 5' | -47.8 | NC_006146.1 | + | 50287 | 0.69 | 0.995125 |
Target: 5'- aAGgGGCGCAGGaGAUCuGUCagGCGCCg -3' miRNA: 3'- -UUgCUGCGUUUgUUAG-UAGaaCGCGG- -5' |
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28724 | 5' | -47.8 | NC_006146.1 | + | 54837 | 0.67 | 0.999215 |
Target: 5'- gGACGuCGCc-ACAuUUGUCaUGCGCCa -3' miRNA: 3'- -UUGCuGCGuuUGUuAGUAGaACGCGG- -5' |
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28724 | 5' | -47.8 | NC_006146.1 | + | 54874 | 0.66 | 0.99948 |
Target: 5'- aAugGGCuGCGGGCGuagcgggGUCcgCUcGCGCCg -3' miRNA: 3'- -UugCUG-CGUUUGU-------UAGuaGAaCGCGG- -5' |
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28724 | 5' | -47.8 | NC_006146.1 | + | 68070 | 0.69 | 0.99431 |
Target: 5'- gAGCGGCGCGAGCAAgcgCAgagCccccGCGCg -3' miRNA: 3'- -UUGCUGCGUUUGUUa--GUa--Gaa--CGCGg -5' |
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28724 | 5' | -47.8 | NC_006146.1 | + | 79075 | 0.67 | 0.999366 |
Target: 5'- --gGACGCAuGCGAUgacggcugcCAaCUUGCGCUg -3' miRNA: 3'- uugCUGCGUuUGUUA---------GUaGAACGCGG- -5' |
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28724 | 5' | -47.8 | NC_006146.1 | + | 84188 | 0.66 | 0.999803 |
Target: 5'- uAGCGAUGCuuGCuc-CAUCgcGUGCCc -3' miRNA: 3'- -UUGCUGCGuuUGuuaGUAGaaCGCGG- -5' |
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28724 | 5' | -47.8 | NC_006146.1 | + | 95321 | 0.66 | 0.999679 |
Target: 5'- --aGGCGCGGAgGGUCugggagagAUUUUGCGCg -3' miRNA: 3'- uugCUGCGUUUgUUAG--------UAGAACGCGg -5' |
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28724 | 5' | -47.8 | NC_006146.1 | + | 98288 | 0.71 | 0.985075 |
Target: 5'- uGCGAUGgAGACAAgccUCAUUUUGCgaguGCCg -3' miRNA: 3'- uUGCUGCgUUUGUU---AGUAGAACG----CGG- -5' |
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28724 | 5' | -47.8 | NC_006146.1 | + | 102197 | 0.68 | 0.997908 |
Target: 5'- cGGgGACGCGGACGG-CGUCaaaGCGCUu -3' miRNA: 3'- -UUgCUGCGUUUGUUaGUAGaa-CGCGG- -5' |
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28724 | 5' | -47.8 | NC_006146.1 | + | 104169 | 0.69 | 0.996473 |
Target: 5'- gAGCGACuGCAGAucCAGUCGcagggccgUCU-GCGCCc -3' miRNA: 3'- -UUGCUG-CGUUU--GUUAGU--------AGAaCGCGG- -5' |
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28724 | 5' | -47.8 | NC_006146.1 | + | 110302 | 0.69 | 0.995125 |
Target: 5'- -uCGGCGUAGGCGuUCAUCgc-CGCCc -3' miRNA: 3'- uuGCUGCGUUUGUuAGUAGaacGCGG- -5' |
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28724 | 5' | -47.8 | NC_006146.1 | + | 111093 | 0.66 | 0.999803 |
Target: 5'- aGACGACGCccuCAAUCAgCUggaGCucuGCCg -3' miRNA: 3'- -UUGCUGCGuuuGUUAGUaGAa--CG---CGG- -5' |
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28724 | 5' | -47.8 | NC_006146.1 | + | 116014 | 0.71 | 0.985075 |
Target: 5'- aGACGGCGCGAGCGGaccCcgCUUaCGCCc -3' miRNA: 3'- -UUGCUGCGUUUGUUa--GuaGAAcGCGG- -5' |
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28724 | 5' | -47.8 | NC_006146.1 | + | 116505 | 0.66 | 0.999672 |
Target: 5'- gAGCGGCGCGAGgAggcggcaccacccAUCGUCUgGC-CCa -3' miRNA: 3'- -UUGCUGCGUUUgU-------------UAGUAGAaCGcGG- -5' |
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28724 | 5' | -47.8 | NC_006146.1 | + | 120609 | 0.72 | 0.97048 |
Target: 5'- cGGCGGCGCcuGACAG--AUCUccUGCGCCc -3' miRNA: 3'- -UUGCUGCGu-UUGUUagUAGA--ACGCGG- -5' |
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28724 | 5' | -47.8 | NC_006146.1 | + | 121861 | 0.71 | 0.983135 |
Target: 5'- uACGACGC-GACGGUC-UCgggccGCGCCc -3' miRNA: 3'- uUGCUGCGuUUGUUAGuAGaa---CGCGG- -5' |
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28724 | 5' | -47.8 | NC_006146.1 | + | 123813 | 0.73 | 0.952149 |
Target: 5'- aGACGGCGCAGcccACcgucuUCGUCagGCGCCc -3' miRNA: 3'- -UUGCUGCGUU---UGuu---AGUAGaaCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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