Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28724 | 5' | -47.8 | NC_006146.1 | + | 170212 | 1.12 | 0.012154 |
Target: 5'- gAACGACGCAAACAAUCAUCUUGCGCCa -3' miRNA: 3'- -UUGCUGCGUUUGUUAGUAGAACGCGG- -5' |
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28724 | 5' | -47.8 | NC_006146.1 | + | 123813 | 0.73 | 0.952149 |
Target: 5'- aGACGGCGCAGcccACcgucuUCGUCagGCGCCc -3' miRNA: 3'- -UUGCUGCGUU---UGuu---AGUAGaaCGCGG- -5' |
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28724 | 5' | -47.8 | NC_006146.1 | + | 120609 | 0.72 | 0.97048 |
Target: 5'- cGGCGGCGCcuGACAG--AUCUccUGCGCCc -3' miRNA: 3'- -UUGCUGCGu-UUGUUagUAGA--ACGCGG- -5' |
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28724 | 5' | -47.8 | NC_006146.1 | + | 121861 | 0.71 | 0.983135 |
Target: 5'- uACGACGC-GACGGUC-UCgggccGCGCCc -3' miRNA: 3'- uUGCUGCGuUUGUUAGuAGaa---CGCGG- -5' |
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28724 | 5' | -47.8 | NC_006146.1 | + | 116014 | 0.71 | 0.985075 |
Target: 5'- aGACGGCGCGAGCGGaccCcgCUUaCGCCc -3' miRNA: 3'- -UUGCUGCGUUUGUUa--GuaGAAcGCGG- -5' |
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28724 | 5' | -47.8 | NC_006146.1 | + | 98288 | 0.71 | 0.985075 |
Target: 5'- uGCGAUGgAGACAAgccUCAUUUUGCgaguGCCg -3' miRNA: 3'- uUGCUGCgUUUGUU---AGUAGAACG----CGG- -5' |
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28724 | 5' | -47.8 | NC_006146.1 | + | 22462 | 0.7 | 0.989885 |
Target: 5'- gGACGAUGCcuGCAccagAUCAUacaGCGCCu -3' miRNA: 3'- -UUGCUGCGuuUGU----UAGUAgaaCGCGG- -5' |
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28724 | 5' | -47.8 | NC_006146.1 | + | 68070 | 0.69 | 0.99431 |
Target: 5'- gAGCGGCGCGAGCAAgcgCAgagCccccGCGCg -3' miRNA: 3'- -UUGCUGCGUUUGUUa--GUa--Gaa--CGCGg -5' |
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28724 | 5' | -47.8 | NC_006146.1 | + | 50287 | 0.69 | 0.995125 |
Target: 5'- aAGgGGCGCAGGaGAUCuGUCagGCGCCg -3' miRNA: 3'- -UUgCUGCGUUUgUUAG-UAGaaCGCGG- -5' |
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28724 | 5' | -47.8 | NC_006146.1 | + | 147852 | 0.69 | 0.995125 |
Target: 5'- aGGCGACGUugcaGAUCAg---GCGCCa -3' miRNA: 3'- -UUGCUGCGuuugUUAGUagaaCGCGG- -5' |
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28724 | 5' | -47.8 | NC_006146.1 | + | 110302 | 0.69 | 0.995125 |
Target: 5'- -uCGGCGUAGGCGuUCAUCgc-CGCCc -3' miRNA: 3'- uuGCUGCGUUUGUuAGUAGaacGCGG- -5' |
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28724 | 5' | -47.8 | NC_006146.1 | + | 104169 | 0.69 | 0.996473 |
Target: 5'- gAGCGACuGCAGAucCAGUCGcagggccgUCU-GCGCCc -3' miRNA: 3'- -UUGCUG-CGUUU--GUUAGU--------AGAaCGCGG- -5' |
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28724 | 5' | -47.8 | NC_006146.1 | + | 125310 | 0.68 | 0.997908 |
Target: 5'- gGGCGugGUAAAUu-UCAUCUgGCauGCCa -3' miRNA: 3'- -UUGCugCGUUUGuuAGUAGAaCG--CGG- -5' |
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28724 | 5' | -47.8 | NC_006146.1 | + | 102197 | 0.68 | 0.997908 |
Target: 5'- cGGgGACGCGGACGG-CGUCaaaGCGCUu -3' miRNA: 3'- -UUgCUGCGUUUGUUaGUAGaa-CGCGG- -5' |
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28724 | 5' | -47.8 | NC_006146.1 | + | 166890 | 0.67 | 0.998818 |
Target: 5'- gAGCGGgGCAAaggccGCGuUCAUCa-GCGCCu -3' miRNA: 3'- -UUGCUgCGUU-----UGUuAGUAGaaCGCGG- -5' |
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28724 | 5' | -47.8 | NC_006146.1 | + | 155428 | 0.67 | 0.998818 |
Target: 5'- cACG-CGCAGGCAcagcgucucgGUCAgggucucgcUCUgcUGCGCCa -3' miRNA: 3'- uUGCuGCGUUUGU----------UAGU---------AGA--ACGCGG- -5' |
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28724 | 5' | -47.8 | NC_006146.1 | + | 32061 | 0.67 | 0.999199 |
Target: 5'- gGGCGugGCGAGCAucgGUCAgCUgaccaaaUGUGCa -3' miRNA: 3'- -UUGCugCGUUUGU---UAGUaGA-------ACGCGg -5' |
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28724 | 5' | -47.8 | NC_006146.1 | + | 135891 | 0.67 | 0.999199 |
Target: 5'- gGGCGugGCGAGCAucgGUCAgCUgaccaaaUGUGCa -3' miRNA: 3'- -UUGCugCGUUUGU---UAGUaGA-------ACGCGg -5' |
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28724 | 5' | -47.8 | NC_006146.1 | + | 160458 | 0.67 | 0.999199 |
Target: 5'- aGGCGGCGCucuCGugGUCAUCcagguagUUGCGCa -3' miRNA: 3'- -UUGCUGCGuuuGU--UAGUAG-------AACGCGg -5' |
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28724 | 5' | -47.8 | NC_006146.1 | + | 54837 | 0.67 | 0.999215 |
Target: 5'- gGACGuCGCc-ACAuUUGUCaUGCGCCa -3' miRNA: 3'- -UUGCuGCGuuUGUuAGUAGaACGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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