miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28725 5' -60.5 NC_006146.1 + 40956 0.66 0.748835
Target:  5'- cCACCCcaGGUccGUGCCguagaCCGCCGUGGUg- -3'
miRNA:   3'- -GUGGG--CCGa-CACGG-----GGCGGUACUAga -5'
28725 5' -60.5 NC_006146.1 + 43408 0.66 0.710701
Target:  5'- -cCCCGGCUGcgacCCCCGCCGUc---- -3'
miRNA:   3'- guGGGCCGACac--GGGGCGGUAcuaga -5'
28725 5' -60.5 NC_006146.1 + 128063 0.66 0.739425
Target:  5'- gGCCUGGCg--GCCCUcgagGCCcUGAUCc -3'
miRNA:   3'- gUGGGCCGacaCGGGG----CGGuACUAGa -5'
28725 5' -60.5 NC_006146.1 + 53025 0.66 0.748835
Target:  5'- uCACgCGGCUGgccgcgGCCgCCGCCGaGAg-- -3'
miRNA:   3'- -GUGgGCCGACa-----CGG-GGCGGUaCUaga -5'
28725 5' -60.5 NC_006146.1 + 4016 0.66 0.748835
Target:  5'- aACgCGGCcuuUGCCCCGCuCGUGAa-- -3'
miRNA:   3'- gUGgGCCGac-ACGGGGCG-GUACUaga -5'
28725 5' -60.5 NC_006146.1 + 33130 0.66 0.710701
Target:  5'- uCGCCgGGCcGcUGCCCCGCuCcgGGUg- -3'
miRNA:   3'- -GUGGgCCGaC-ACGGGGCG-GuaCUAga -5'
28725 5' -60.5 NC_006146.1 + 109479 0.66 0.720349
Target:  5'- aGCCCGGCcGUG-CCCGCguUGGc-- -3'
miRNA:   3'- gUGGGCCGaCACgGGGCGguACUaga -5'
28725 5' -60.5 NC_006146.1 + 88529 0.66 0.729927
Target:  5'- aACCCGGgUGUGgagCCCGCgAUGG-CUg -3'
miRNA:   3'- gUGGGCCgACACg--GGGCGgUACUaGA- -5'
28725 5' -60.5 NC_006146.1 + 127861 0.66 0.729927
Target:  5'- gCAgCCGGC-GUGCCauaCCGCgCGUGAUa- -3'
miRNA:   3'- -GUgGGCCGaCACGG---GGCG-GUACUAga -5'
28725 5' -60.5 NC_006146.1 + 33876 0.67 0.640867
Target:  5'- cCACCCGGCcuccuccccggggUGUGCCCgGCCu------ -3'
miRNA:   3'- -GUGGGCCG-------------ACACGGGgCGGuacuaga -5'
28725 5' -60.5 NC_006146.1 + 165244 0.67 0.638882
Target:  5'- gCACCCgcGGCUgGUGCucgucccccuguccCCCGCCAUGGc-- -3'
miRNA:   3'- -GUGGG--CCGA-CACG--------------GGGCGGUACUaga -5'
28725 5' -60.5 NC_006146.1 + 33376 0.67 0.691223
Target:  5'- cCGCCgGGCcGcUGCCCCGCuCcgGGUg- -3'
miRNA:   3'- -GUGGgCCGaC-ACGGGGCG-GuaCUAga -5'
28725 5' -60.5 NC_006146.1 + 45912 0.67 0.66168
Target:  5'- gCGCCCGGCcgGUGaCCgUGCCGUagguggacggGGUCUc -3'
miRNA:   3'- -GUGGGCCGa-CAC-GGgGCGGUA----------CUAGA- -5'
28725 5' -60.5 NC_006146.1 + 33254 0.67 0.691223
Target:  5'- cCGCCgGGCcGcUGCCCCGCuCcgGGUg- -3'
miRNA:   3'- -GUGGgCCGaC-ACGGGGCG-GuaCUAga -5'
28725 5' -60.5 NC_006146.1 + 23735 0.67 0.651777
Target:  5'- gGCgCCGGuCUGcGCCgCCGCCG-GGUCa -3'
miRNA:   3'- gUG-GGCC-GACaCGG-GGCGGUaCUAGa -5'
28725 5' -60.5 NC_006146.1 + 32937 0.67 0.66168
Target:  5'- -cCCCGGgaG-GCCCgGCCGcGAUCc -3'
miRNA:   3'- guGGGCCgaCaCGGGgCGGUaCUAGa -5'
28725 5' -60.5 NC_006146.1 + 112339 0.67 0.685341
Target:  5'- gAUCUGGCUGUGCCagggcuccauguaggCCGCCAcgcUGAc-- -3'
miRNA:   3'- gUGGGCCGACACGG---------------GGCGGU---ACUaga -5'
28725 5' -60.5 NC_006146.1 + 85489 0.67 0.66168
Target:  5'- gGCCUGGCUGgucuCCUCGUCggGAUCc -3'
miRNA:   3'- gUGGGCCGACac--GGGGCGGuaCUAGa -5'
28725 5' -60.5 NC_006146.1 + 113866 0.68 0.582451
Target:  5'- aACCCuggcGGCUucGCCCCGgCCGUGAUUc -3'
miRNA:   3'- gUGGG----CCGAcaCGGGGC-GGUACUAGa -5'
28725 5' -60.5 NC_006146.1 + 15433 0.68 0.602189
Target:  5'- gGCCCGGCUGcaGUCCUGCC-UGGc-- -3'
miRNA:   3'- gUGGGCCGACa-CGGGGCGGuACUaga -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.