miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28725 5' -60.5 NC_006146.1 + 169071 1.06 0.001858
Target:  5'- gCACCCGGCUGUGCCCCGCCAUGAUCUc -3'
miRNA:   3'- -GUGGGCCGACACGGGGCGGUACUAGA- -5'
28725 5' -60.5 NC_006146.1 + 93983 0.74 0.287996
Target:  5'- uCACCCGGCUGcaGCCCCGC---GGUCa -3'
miRNA:   3'- -GUGGGCCGACa-CGGGGCGguaCUAGa -5'
28725 5' -60.5 NC_006146.1 + 114529 0.74 0.287996
Target:  5'- uUACCCGGCggcgGUGCUCCGCCAc----- -3'
miRNA:   3'- -GUGGGCCGa---CACGGGGCGGUacuaga -5'
28725 5' -60.5 NC_006146.1 + 156775 0.72 0.398983
Target:  5'- aCACCUGGCUGUagGCCgCCGCCAg----- -3'
miRNA:   3'- -GUGGGCCGACA--CGG-GGCGGUacuaga -5'
28725 5' -60.5 NC_006146.1 + 33288 0.7 0.477469
Target:  5'- gGCCCGGCUGggcaccgcUGCgCCGCCGcucGGUCc -3'
miRNA:   3'- gUGGGCCGAC--------ACGgGGCGGUa--CUAGa -5'
28725 5' -60.5 NC_006146.1 + 33543 0.69 0.562847
Target:  5'- uGCCCGGCU-UGCCUgGCCcUGGUg- -3'
miRNA:   3'- gUGGGCCGAcACGGGgCGGuACUAga -5'
28725 5' -60.5 NC_006146.1 + 113866 0.68 0.582451
Target:  5'- aACCCuggcGGCUucGCCCCGgCCGUGAUUc -3'
miRNA:   3'- gUGGG----CCGAcaCGGGGC-GGUACUAGa -5'
28725 5' -60.5 NC_006146.1 + 33164 0.68 0.592306
Target:  5'- gGCCCGGCUGggcaccgccGCgCCGCCGcucGGUCc -3'
miRNA:   3'- gUGGGCCGACa--------CGgGGCGGUa--CUAGa -5'
28725 5' -60.5 NC_006146.1 + 33689 0.68 0.599221
Target:  5'- cCACCCGGCuuccuccccggggUGUGCCCgGCCuacccccguUCUg -3'
miRNA:   3'- -GUGGGCCG-------------ACACGGGgCGGuacu-----AGA- -5'
28725 5' -60.5 NC_006146.1 + 15433 0.68 0.602189
Target:  5'- gGCCCGGCUGcaGUCCUGCC-UGGc-- -3'
miRNA:   3'- gUGGGCCGACa-CGGGGCGGuACUaga -5'
28725 5' -60.5 NC_006146.1 + 67801 0.68 0.62201
Target:  5'- gGCCaGGCUcUGCCCCGCCucgGAa-- -3'
miRNA:   3'- gUGGgCCGAcACGGGGCGGua-CUaga -5'
28725 5' -60.5 NC_006146.1 + 165244 0.67 0.638882
Target:  5'- gCACCCgcGGCUgGUGCucgucccccuguccCCCGCCAUGGc-- -3'
miRNA:   3'- -GUGGG--CCGA-CACG--------------GGGCGGUACUaga -5'
28725 5' -60.5 NC_006146.1 + 33876 0.67 0.640867
Target:  5'- cCACCCGGCcuccuccccggggUGUGCCCgGCCu------ -3'
miRNA:   3'- -GUGGGCCG-------------ACACGGGgCGGuacuaga -5'
28725 5' -60.5 NC_006146.1 + 23735 0.67 0.651777
Target:  5'- gGCgCCGGuCUGcGCCgCCGCCG-GGUCa -3'
miRNA:   3'- gUG-GGCC-GACaCGG-GGCGGUaCUAGa -5'
28725 5' -60.5 NC_006146.1 + 45912 0.67 0.66168
Target:  5'- gCGCCCGGCcgGUGaCCgUGCCGUagguggacggGGUCUc -3'
miRNA:   3'- -GUGGGCCGa-CAC-GGgGCGGUA----------CUAGA- -5'
28725 5' -60.5 NC_006146.1 + 32937 0.67 0.66168
Target:  5'- -cCCCGGgaG-GCCCgGCCGcGAUCc -3'
miRNA:   3'- guGGGCCgaCaCGGGgCGGUaCUAGa -5'
28725 5' -60.5 NC_006146.1 + 85489 0.67 0.66168
Target:  5'- gGCCUGGCUGgucuCCUCGUCggGAUCc -3'
miRNA:   3'- gUGGGCCGACac--GGGGCGGuaCUAGa -5'
28725 5' -60.5 NC_006146.1 + 112339 0.67 0.685341
Target:  5'- gAUCUGGCUGUGCCagggcuccauguaggCCGCCAcgcUGAc-- -3'
miRNA:   3'- gUGGGCCGACACGG---------------GGCGGU---ACUaga -5'
28725 5' -60.5 NC_006146.1 + 33376 0.67 0.691223
Target:  5'- cCGCCgGGCcGcUGCCCCGCuCcgGGUg- -3'
miRNA:   3'- -GUGGgCCGaC-ACGGGGCG-GuaCUAga -5'
28725 5' -60.5 NC_006146.1 + 33254 0.67 0.691223
Target:  5'- cCGCCgGGCcGcUGCCCCGCuCcgGGUg- -3'
miRNA:   3'- -GUGGgCCGaC-ACGGGGCG-GuaCUAga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.