miRNA display CGI


Results 61 - 80 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28726 5' -51.2 NC_006146.1 + 156919 0.7 0.941537
Target:  5'- cCGAGGCCuGGgUGgCGGCgcugaCGGGCUCCg -3'
miRNA:   3'- -GUUUCGGuUUgACaGCCG-----GUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 67037 0.7 0.941537
Target:  5'- gGGAGCC-GACaGUCGGCCGGGaCggagaCCa -3'
miRNA:   3'- gUUUCGGuUUGaCAGCCGGUUC-Ga----GG- -5'
28726 5' -51.2 NC_006146.1 + 120538 0.7 0.941537
Target:  5'- --cGGCgGGACUGcUGGCCAAGaUCCc -3'
miRNA:   3'- guuUCGgUUUGACaGCCGGUUCgAGG- -5'
28726 5' -51.2 NC_006146.1 + 48340 0.69 0.944815
Target:  5'- -uGGGCCAGGCguccaGUCuGGCCAgcgggccggccucgAGUUCCg -3'
miRNA:   3'- guUUCGGUUUGa----CAG-CCGGU--------------UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 24940 0.69 0.945273
Target:  5'- -cAGGCCAGGCcccuuagaccCGGCCAGGCcCCa -3'
miRNA:   3'- guUUCGGUUUGaca-------GCCGGUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 11443 0.69 0.946182
Target:  5'- --uGGCCAAGgUGgCGGCCcucaagGAGUUCCc -3'
miRNA:   3'- guuUCGGUUUgACaGCCGG------UUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 108886 0.69 0.946182
Target:  5'- aGAGGCCGAGCgccgCGGCCA-GCgagUCa -3'
miRNA:   3'- gUUUCGGUUUGaca-GCCGGUuCGa--GG- -5'
28726 5' -51.2 NC_006146.1 + 117720 0.69 0.946182
Target:  5'- cCAAGGCCGGGgccgaGGCCGAGCcuUCCg -3'
miRNA:   3'- -GUUUCGGUUUgacagCCGGUUCG--AGG- -5'
28726 5' -51.2 NC_006146.1 + 45657 0.69 0.946182
Target:  5'- aCAGAGUCcGGCgccaGGCCAguGGCUCCc -3'
miRNA:   3'- -GUUUCGGuUUGacagCCGGU--UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 94397 0.69 0.946182
Target:  5'- uGGAGCCAGG-UGUgGGCCGugaGGCUUg -3'
miRNA:   3'- gUUUCGGUUUgACAgCCGGU---UCGAGg -5'
28726 5' -51.2 NC_006146.1 + 46302 0.69 0.949284
Target:  5'- --cGGUCGAGCUcGagccccucuuccucUCGGCCGGGCUUCu -3'
miRNA:   3'- guuUCGGUUUGA-C--------------AGCCGGUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 46181 0.69 0.950576
Target:  5'- uGGGGCCAGAgaG-CGGCCcGAGuCUCUa -3'
miRNA:   3'- gUUUCGGUUUgaCaGCCGG-UUC-GAGG- -5'
28726 5' -51.2 NC_006146.1 + 103745 0.69 0.950576
Target:  5'- cCGGAcGCCGcGCUcaGgagCGGCCAgcGGCUCCc -3'
miRNA:   3'- -GUUU-CGGUuUGA--Ca--GCCGGU--UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 111908 0.69 0.954724
Target:  5'- gGGAGgCAGA-UGUUGGCCAGGUUgCa -3'
miRNA:   3'- gUUUCgGUUUgACAGCCGGUUCGAgG- -5'
28726 5' -51.2 NC_006146.1 + 68750 0.69 0.954724
Target:  5'- gGAGGCCcag--GU-GGCCAAGCUUCa -3'
miRNA:   3'- gUUUCGGuuugaCAgCCGGUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 7722 0.69 0.954724
Target:  5'- aGAAGCCAAgccACUGccCGGUCAaagaagAGCUCa -3'
miRNA:   3'- gUUUCGGUU---UGACa-GCCGGU------UCGAGg -5'
28726 5' -51.2 NC_006146.1 + 113039 0.69 0.954724
Target:  5'- --cGGCCAGGacGUCGGCCucgGGgUCCa -3'
miRNA:   3'- guuUCGGUUUgaCAGCCGGu--UCgAGG- -5'
28726 5' -51.2 NC_006146.1 + 46401 0.69 0.954724
Target:  5'- cCAGGGCCGAGacca-GGCCGAGUcCCg -3'
miRNA:   3'- -GUUUCGGUUUgacagCCGGUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 77546 0.69 0.957868
Target:  5'- -cGGGCCAcguguacguggcGCUGUCcagGGCCAGGCacUCCa -3'
miRNA:   3'- guUUCGGUu-----------UGACAG---CCGGUUCG--AGG- -5'
28726 5' -51.2 NC_006146.1 + 52485 0.69 0.95863
Target:  5'- --cGGCCAggGACUGgacgaCGGCCGAGUUg- -3'
miRNA:   3'- guuUCGGU--UUGACa----GCCGGUUCGAgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.