miRNA display CGI


Results 61 - 80 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28726 5' -51.2 NC_006146.1 + 74572 0.67 0.985671
Target:  5'- ----aCCGGGCUGUCgaaGGUCAcuGCUCCg -3'
miRNA:   3'- guuucGGUUUGACAG---CCGGUu-CGAGG- -5'
28726 5' -51.2 NC_006146.1 + 38285 0.67 0.985671
Target:  5'- -cGGGCCAcACUGcCGGCCcu-UUCCa -3'
miRNA:   3'- guUUCGGUuUGACaGCCGGuucGAGG- -5'
28726 5' -51.2 NC_006146.1 + 60789 0.67 0.985671
Target:  5'- gGGAGCCGGACcagGUCcagGGCCu-GgUCCg -3'
miRNA:   3'- gUUUCGGUUUGa--CAG---CCGGuuCgAGG- -5'
28726 5' -51.2 NC_006146.1 + 73508 0.67 0.98514
Target:  5'- gCGGGGUCAcGCgcaggcuuacuuuuUGcaUGGCCAGGCUCCg -3'
miRNA:   3'- -GUUUCGGUuUG--------------ACa-GCCGGUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 148729 0.67 0.98384
Target:  5'- cCAAGGCCAccgGGCgg--GGCCAGGgcCUCCa -3'
miRNA:   3'- -GUUUCGGU---UUGacagCCGGUUC--GAGG- -5'
28726 5' -51.2 NC_006146.1 + 154885 0.67 0.98384
Target:  5'- cCAAGGCCAccgGGCgg--GGCCAGGgcCUCCa -3'
miRNA:   3'- -GUUUCGGU---UUGacagCCGGUUC--GAGG- -5'
28726 5' -51.2 NC_006146.1 + 157963 0.67 0.98384
Target:  5'- cCAAGGCCAccgGGCgg--GGCCAGGgcCUCCa -3'
miRNA:   3'- -GUUUCGGU---UUGacagCCGGUUC--GAGG- -5'
28726 5' -51.2 NC_006146.1 + 64194 0.67 0.98384
Target:  5'- aGGAGUugCAAGgUGUC-GCgGAGCUCCg -3'
miRNA:   3'- gUUUCG--GUUUgACAGcCGgUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 3877 0.67 0.98384
Target:  5'- aGAAGCU--GCUGgucUCGGCgAGGC-CCa -3'
miRNA:   3'- gUUUCGGuuUGAC---AGCCGgUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 142574 0.67 0.98384
Target:  5'- cCAAGGCCAccgGGCgg--GGCCAGGgcCUCCa -3'
miRNA:   3'- -GUUUCGGU---UUGacagCCGGUUC--GAGG- -5'
28726 5' -51.2 NC_006146.1 + 145652 0.67 0.98384
Target:  5'- cCAAGGCCAccgGGCgg--GGCCAGGgcCUCCa -3'
miRNA:   3'- -GUUUCGGU---UUGacagCCGGUUC--GAGG- -5'
28726 5' -51.2 NC_006146.1 + 151807 0.67 0.98384
Target:  5'- cCAAGGCCAccgGGCgg--GGCCAGGgcCUCCa -3'
miRNA:   3'- -GUUUCGGU---UUGacagCCGGUUC--GAGG- -5'
28726 5' -51.2 NC_006146.1 + 47526 0.67 0.983648
Target:  5'- --cAGCCAggUUGcggggccccCGGCCAgcgccagAGCUCCc -3'
miRNA:   3'- guuUCGGUuuGACa--------GCCGGU-------UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 38061 0.67 0.981838
Target:  5'- cCAGAGUCAGGCUGU-GGCCAAa---- -3'
miRNA:   3'- -GUUUCGGUUUGACAgCCGGUUcgagg -5'
28726 5' -51.2 NC_006146.1 + 6429 0.67 0.981838
Target:  5'- cCAGGGCCA---UGUgGGCCcuGGGgUCCa -3'
miRNA:   3'- -GUUUCGGUuugACAgCCGG--UUCgAGG- -5'
28726 5' -51.2 NC_006146.1 + 131479 0.67 0.981838
Target:  5'- -cGGGCCAGGCcc-CGGCCAAcuucuGCUUCa -3'
miRNA:   3'- guUUCGGUUUGacaGCCGGUU-----CGAGG- -5'
28726 5' -51.2 NC_006146.1 + 112853 0.67 0.981838
Target:  5'- aCAGguAGCCGGcggagacuaugcGCUcGUaGGCCGGGCUCUg -3'
miRNA:   3'- -GUU--UCGGUU------------UGA-CAgCCGGUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 119292 0.67 0.981627
Target:  5'- aCGGAcGCCGAAgUGUgguacgcUGGCCccucuGGCUCCc -3'
miRNA:   3'- -GUUU-CGGUUUgACA-------GCCGGu----UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 54305 0.67 0.979654
Target:  5'- gGAAGC--GACgUGU-GGCCAGGCUCa -3'
miRNA:   3'- gUUUCGguUUG-ACAgCCGGUUCGAGg -5'
28726 5' -51.2 NC_006146.1 + 139123 0.67 0.979654
Target:  5'- ---uGUCAAuuggggGCUGUgGGCCGaacgggGGCUCCc -3'
miRNA:   3'- guuuCGGUU------UGACAgCCGGU------UCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.