Results 41 - 60 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28726 | 5' | -51.2 | NC_006146.1 | + | 39545 | 0.66 | 0.988853 |
Target: 5'- aAAAGUgGAGCUGgaugucaaUGGCCAGGaUCCu -3' miRNA: 3'- gUUUCGgUUUGACa-------GCCGGUUCgAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 19021 | 0.66 | 0.988853 |
Target: 5'- gCGAGGCUggguGGCUGggcaGGCCGGGuCUCg -3' miRNA: 3'- -GUUUCGGu---UUGACag--CCGGUUC-GAGg -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 78561 | 0.66 | 0.988853 |
Target: 5'- -cGAGCCGccccauaucAGCUGccccaGGCCGGGC-CCg -3' miRNA: 3'- guUUCGGU---------UUGACag---CCGGUUCGaGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 28255 | 0.66 | 0.988853 |
Target: 5'- gCGAGGCUggguGGCUGggcaGGCCGGGuCUCg -3' miRNA: 3'- -GUUUCGGu---UUGACag--CCGGUUC-GAGg -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 127420 | 0.66 | 0.988709 |
Target: 5'- cCGGAGCCGGugUcaaCGGCCGccgaggaGGCUgCCg -3' miRNA: 3'- -GUUUCGGUUugAca-GCCGGU-------UCGA-GG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 28498 | 0.67 | 0.987339 |
Target: 5'- ---cGCCAGGCgggGUcCGGCCu--CUCCu -3' miRNA: 3'- guuuCGGUUUGa--CA-GCCGGuucGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 25420 | 0.67 | 0.987339 |
Target: 5'- ---cGCCAGGCgggGUcCGGCCu--CUCCu -3' miRNA: 3'- guuuCGGUUUGa--CA-GCCGGuucGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 19264 | 0.67 | 0.987339 |
Target: 5'- ---cGCCAGGCgggGUcCGGCCu--CUCCu -3' miRNA: 3'- guuuCGGUUUGa--CA-GCCGGuucGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 127055 | 0.67 | 0.987339 |
Target: 5'- aGAGGCCcucGAGCUGgCGGCgCGGGaagCCg -3' miRNA: 3'- gUUUCGG---UUUGACaGCCG-GUUCga-GG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 137039 | 0.67 | 0.987339 |
Target: 5'- gGAGGCCGGG-UGggGGCCugGGGUUCCg -3' miRNA: 3'- gUUUCGGUUUgACagCCGG--UUCGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 43741 | 0.67 | 0.987339 |
Target: 5'- -cGGGCCAggUgGUCGcgcaugacGCCGuccAGCUCCa -3' miRNA: 3'- guUUCGGUuuGaCAGC--------CGGU---UCGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 20707 | 0.67 | 0.987339 |
Target: 5'- gCAAGGCCAuuaagaAGCUGcuggCGGCCugcGAGgaCCc -3' miRNA: 3'- -GUUUCGGU------UUGACa---GCCGG---UUCgaGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 22342 | 0.67 | 0.987339 |
Target: 5'- ---cGCCAGGCgggGUcCGGCCu--CUCCu -3' miRNA: 3'- guuuCGGUUUGa--CA-GCCGGuucGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 75635 | 0.67 | 0.987339 |
Target: 5'- gAAGGCCAuauAGCUugcagaGGCCAAGgaCCg -3' miRNA: 3'- gUUUCGGU---UUGAcag---CCGGUUCgaGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 13108 | 0.67 | 0.987339 |
Target: 5'- ---cGCCAGGCgggGUcCGGCCu--CUCCu -3' miRNA: 3'- guuuCGGUUUGa--CA-GCCGGuucGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 152804 | 0.67 | 0.987339 |
Target: 5'- gGAGGCCcgcuGCUcGUCGcGCgAguacAGCUCCa -3' miRNA: 3'- gUUUCGGuu--UGA-CAGC-CGgU----UCGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 16186 | 0.67 | 0.987339 |
Target: 5'- ---cGCCAGGCgggGUcCGGCCu--CUCCu -3' miRNA: 3'- guuuCGGUUUGa--CA-GCCGGuucGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 13566 | 0.67 | 0.987339 |
Target: 5'- ---cGCCGGGCUGcgcaagcaGGCCGggGGCUCa -3' miRNA: 3'- guuuCGGUUUGACag------CCGGU--UCGAGg -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 74572 | 0.67 | 0.985671 |
Target: 5'- ----aCCGGGCUGUCgaaGGUCAcuGCUCCg -3' miRNA: 3'- guuucGGUUUGACAG---CCGGUu-CGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 160605 | 0.67 | 0.985671 |
Target: 5'- ---uGCCcccgagGUCGGCCGccuggcaugccAGCUCCg -3' miRNA: 3'- guuuCGGuuuga-CAGCCGGU-----------UCGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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