miRNA display CGI


Results 41 - 60 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28726 5' -51.2 NC_006146.1 + 38061 0.67 0.981838
Target:  5'- cCAGAGUCAGGCUGU-GGCCAAa---- -3'
miRNA:   3'- -GUUUCGGUUUGACAgCCGGUUcgagg -5'
28726 5' -51.2 NC_006146.1 + 38285 0.67 0.985671
Target:  5'- -cGGGCCAcACUGcCGGCCcu-UUCCa -3'
miRNA:   3'- guUUCGGUuUGACaGCCGGuucGAGG- -5'
28726 5' -51.2 NC_006146.1 + 39308 0.66 0.994436
Target:  5'- aGAGGCCuguguACUGggcUCGGCUGGcCUCCc -3'
miRNA:   3'- gUUUCGGuu---UGAC---AGCCGGUUcGAGG- -5'
28726 5' -51.2 NC_006146.1 + 39545 0.66 0.988853
Target:  5'- aAAAGUgGAGCUGgaugucaaUGGCCAGGaUCCu -3'
miRNA:   3'- gUUUCGgUUUGACa-------GCCGGUUCgAGG- -5'
28726 5' -51.2 NC_006146.1 + 39654 0.66 0.994436
Target:  5'- -uGGGCUgAGACUGccUUGGCCuuggaggcggcGGGCUCCu -3'
miRNA:   3'- guUUCGG-UUUGAC--AGCCGG-----------UUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 39775 0.72 0.850275
Target:  5'- uGGAGUCAGGCU-UgGGCCcgGAGCUCCc -3'
miRNA:   3'- gUUUCGGUUUGAcAgCCGG--UUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 40027 0.66 0.992564
Target:  5'- gGGGGCCu-GCUGggGGCCGuAGCcgacUCCg -3'
miRNA:   3'- gUUUCGGuuUGACagCCGGU-UCG----AGG- -5'
28726 5' -51.2 NC_006146.1 + 41356 0.7 0.936641
Target:  5'- cCAGGGCCuGGCgGUggUGGCCGuGGCUCUg -3'
miRNA:   3'- -GUUUCGGuUUGaCA--GCCGGU-UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 42907 0.74 0.778864
Target:  5'- cUAGGGCCucugucccGGCUGUCagcagcggcGCCAAGCUCCg -3'
miRNA:   3'- -GUUUCGGu-------UUGACAGc--------CGGUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 43519 0.74 0.749513
Target:  5'- -cGGGCCAGGCUGcCGGCCAccaucaguggGGUgUCCg -3'
miRNA:   3'- guUUCGGUUUGACaGCCGGU----------UCG-AGG- -5'
28726 5' -51.2 NC_006146.1 + 43741 0.67 0.987339
Target:  5'- -cGGGCCAggUgGUCGcgcaugacGCCGuccAGCUCCa -3'
miRNA:   3'- guUUCGGUuuGaCAGC--------CGGU---UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 45242 0.68 0.967045
Target:  5'- gGAGGCUggGgugUUGUCGGCCGAuuggaacccguccccGCUCa -3'
miRNA:   3'- gUUUCGGuuU---GACAGCCGGUU---------------CGAGg -5'
28726 5' -51.2 NC_006146.1 + 45442 0.68 0.968944
Target:  5'- uGAAGUgGAACUGUaGGUCAGGCa-- -3'
miRNA:   3'- gUUUCGgUUUGACAgCCGGUUCGagg -5'
28726 5' -51.2 NC_006146.1 + 45657 0.69 0.946182
Target:  5'- aCAGAGUCcGGCgccaGGCCAguGGCUCCc -3'
miRNA:   3'- -GUUUCGGuUUGacagCCGGU--UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 46181 0.69 0.950576
Target:  5'- uGGGGCCAGAgaG-CGGCCcGAGuCUCUa -3'
miRNA:   3'- gUUUCGGUUUgaCaGCCGG-UUC-GAGG- -5'
28726 5' -51.2 NC_006146.1 + 46302 0.69 0.949284
Target:  5'- --cGGUCGAGCUcGagccccucuuccucUCGGCCGGGCUUCu -3'
miRNA:   3'- guuUCGGUUUGA-C--------------AGCCGGUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 46401 0.69 0.954724
Target:  5'- cCAGGGCCGAGacca-GGCCGAGUcCCg -3'
miRNA:   3'- -GUUUCGGUUUgacagCCGGUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 46596 0.74 0.78838
Target:  5'- uCAuGGCCacgaugGggUUGUCGGCCAGGUcuUCCa -3'
miRNA:   3'- -GUuUCGG------UuuGACAGCCGGUUCG--AGG- -5'
28726 5' -51.2 NC_006146.1 + 46698 0.73 0.833524
Target:  5'- aGGAGUCccaguAAgaGUCGGCCGcggcGGCUCCg -3'
miRNA:   3'- gUUUCGGu----UUgaCAGCCGGU----UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 46741 0.7 0.920427
Target:  5'- gGAGGCCAcGCU---GGCCAGGgUCCu -3'
miRNA:   3'- gUUUCGGUuUGAcagCCGGUUCgAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.