miRNA display CGI


Results 21 - 40 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28726 5' -51.2 NC_006146.1 + 16186 0.67 0.987339
Target:  5'- ---cGCCAGGCgggGUcCGGCCu--CUCCu -3'
miRNA:   3'- guuuCGGUUUGa--CA-GCCGGuucGAGG- -5'
28726 5' -51.2 NC_006146.1 + 18784 0.69 0.96086
Target:  5'- -cAGGCCAGGCcaccuuagaccCGGCCAGGCcCCa -3'
miRNA:   3'- guUUCGGUUUGaca--------GCCGGUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 18994 0.71 0.895259
Target:  5'- cCGGAGCCAGACcccagUGggGGCCcccucGAGUUCCa -3'
miRNA:   3'- -GUUUCGGUUUG-----ACagCCGG-----UUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 19021 0.66 0.988853
Target:  5'- gCGAGGCUggguGGCUGggcaGGCCGGGuCUCg -3'
miRNA:   3'- -GUUUCGGu---UUGACag--CCGGUUC-GAGg -5'
28726 5' -51.2 NC_006146.1 + 19129 0.78 0.582779
Target:  5'- gGGAGUCAGAgaGUCGGCCuAGGC-CCg -3'
miRNA:   3'- gUUUCGGUUUgaCAGCCGG-UUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 19264 0.67 0.987339
Target:  5'- ---cGCCAGGCgggGUcCGGCCu--CUCCu -3'
miRNA:   3'- guuuCGGUUUGa--CA-GCCGGuucGAGG- -5'
28726 5' -51.2 NC_006146.1 + 20707 0.67 0.987339
Target:  5'- gCAAGGCCAuuaagaAGCUGcuggCGGCCugcGAGgaCCc -3'
miRNA:   3'- -GUUUCGGU------UUGACa---GCCGG---UUCgaGG- -5'
28726 5' -51.2 NC_006146.1 + 21862 0.69 0.96086
Target:  5'- -cAGGCCAGGCcaccuuagaccCGGCCAGGCcCCa -3'
miRNA:   3'- guUUCGGUUUGaca--------GCCGGUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 22099 0.66 0.988853
Target:  5'- gCGAGGCUggguGGCUGggcaGGCCGGGuCUCg -3'
miRNA:   3'- -GUUUCGGu---UUGACag--CCGGUUC-GAGg -5'
28726 5' -51.2 NC_006146.1 + 22207 0.78 0.582779
Target:  5'- gGGAGUCAGAgaGUCGGCCuAGGC-CCg -3'
miRNA:   3'- gUUUCGGUUUgaCAGCCGG-UUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 22342 0.67 0.987339
Target:  5'- ---cGCCAGGCgggGUcCGGCCu--CUCCu -3'
miRNA:   3'- guuuCGGUUUGa--CA-GCCGGuucGAGG- -5'
28726 5' -51.2 NC_006146.1 + 24940 0.69 0.945273
Target:  5'- -cAGGCCAGGCcccuuagaccCGGCCAGGCcCCa -3'
miRNA:   3'- guUUCGGUUUGaca-------GCCGGUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 25177 0.66 0.988853
Target:  5'- gCGAGGCUggguGGCUGggcaGGCCGGGuCUCg -3'
miRNA:   3'- -GUUUCGGu---UUGACag--CCGGUUC-GAGg -5'
28726 5' -51.2 NC_006146.1 + 25285 0.78 0.582779
Target:  5'- gGGAGUCAGAgaGUCGGCCuAGGC-CCg -3'
miRNA:   3'- gUUUCGGUUUgaCAGCCGG-UUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 25420 0.67 0.987339
Target:  5'- ---cGCCAGGCgggGUcCGGCCu--CUCCu -3'
miRNA:   3'- guuuCGGUUUGa--CA-GCCGGuucGAGG- -5'
28726 5' -51.2 NC_006146.1 + 28017 0.69 0.96086
Target:  5'- -cAGGCCAGGCcaccuuagaccCGGCCAGGCcCCa -3'
miRNA:   3'- guUUCGGUUUGaca--------GCCGGUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 28255 0.66 0.988853
Target:  5'- gCGAGGCUggguGGCUGggcaGGCCGGGuCUCg -3'
miRNA:   3'- -GUUUCGGu---UUGACag--CCGGUUC-GAGg -5'
28726 5' -51.2 NC_006146.1 + 28363 0.78 0.582779
Target:  5'- gGGAGUCAGAgaGUCGGCCuAGGC-CCg -3'
miRNA:   3'- gUUUCGGUUUgaCAGCCGG-UUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 28498 0.67 0.987339
Target:  5'- ---cGCCAGGCgggGUcCGGCCu--CUCCu -3'
miRNA:   3'- guuuCGGUUUGa--CA-GCCGGuucGAGG- -5'
28726 5' -51.2 NC_006146.1 + 29607 0.7 0.920427
Target:  5'- --cAGCCAGGCUGaacCcGCCAAuGCUCCc -3'
miRNA:   3'- guuUCGGUUUGACa--GcCGGUU-CGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.