miRNA display CGI


Results 21 - 40 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28726 5' -51.2 NC_006146.1 + 46596 0.74 0.78838
Target:  5'- uCAuGGCCacgaugGggUUGUCGGCCAGGUcuUCCa -3'
miRNA:   3'- -GUuUCGG------UuuGACAGCCGGUUCG--AGG- -5'
28726 5' -51.2 NC_006146.1 + 80014 0.73 0.806954
Target:  5'- -uGGGcCCAggUUGagGGCCAGGCUCg -3'
miRNA:   3'- guUUC-GGUuuGACagCCGGUUCGAGg -5'
28726 5' -51.2 NC_006146.1 + 49480 0.73 0.824851
Target:  5'- gAGGGCCGcGgUGUCGGCCAGGggCg -3'
miRNA:   3'- gUUUCGGUuUgACAGCCGGUUCgaGg -5'
28726 5' -51.2 NC_006146.1 + 46698 0.73 0.833524
Target:  5'- aGGAGUCccaguAAgaGUCGGCCGcggcGGCUCCg -3'
miRNA:   3'- gUUUCGGu----UUgaCAGCCGGU----UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 121341 0.73 0.842001
Target:  5'- uCGAGGCCAuGCUGggccUGGCCGgcguGGcCUCCg -3'
miRNA:   3'- -GUUUCGGUuUGACa---GCCGGU----UC-GAGG- -5'
28726 5' -51.2 NC_006146.1 + 117252 0.72 0.850275
Target:  5'- cCGGGGCCAGGgggGUCGGC-AGGUUCCc -3'
miRNA:   3'- -GUUUCGGUUUga-CAGCCGgUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 39775 0.72 0.850275
Target:  5'- uGGAGUCAGGCU-UgGGCCcgGAGCUCCc -3'
miRNA:   3'- gUUUCGGUUUGAcAgCCGG--UUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 158190 0.72 0.866183
Target:  5'- --uGGCCGucagGACccccuUGUCaauGGCCAGGCUCCu -3'
miRNA:   3'- guuUCGGU----UUG-----ACAG---CCGGUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 149981 0.72 0.873052
Target:  5'- cCAGGGCCu-GCagGUCGGCCGgacucagGGcCUCCa -3'
miRNA:   3'- -GUUUCGGuuUGa-CAGCCGGU-------UC-GAGG- -5'
28726 5' -51.2 NC_006146.1 + 128274 0.72 0.881193
Target:  5'- uGAGGCCcacGGCgg-CGGCCGAGCcCCa -3'
miRNA:   3'- gUUUCGGu--UUGacaGCCGGUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 151569 0.71 0.888346
Target:  5'- gCGAGGCCGGGCa---GGCCGGGCaggCCg -3'
miRNA:   3'- -GUUUCGGUUUGacagCCGGUUCGa--GG- -5'
28726 5' -51.2 NC_006146.1 + 145413 0.71 0.888346
Target:  5'- gCGAGGCCGGGCa---GGCCGGGCaggCCg -3'
miRNA:   3'- -GUUUCGGUUUGacagCCGGUUCGa--GG- -5'
28726 5' -51.2 NC_006146.1 + 154647 0.71 0.888346
Target:  5'- gCGAGGCCGGGCa---GGCCGGGCaggCCg -3'
miRNA:   3'- -GUUUCGGUUUGacagCCGGUUCGa--GG- -5'
28726 5' -51.2 NC_006146.1 + 64315 0.71 0.888346
Target:  5'- uGGGGCCGuACUGgCGGCagUAAGCUCUc -3'
miRNA:   3'- gUUUCGGUuUGACaGCCG--GUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 157724 0.71 0.888346
Target:  5'- gCGAGGCCGGGCa---GGCCGGGCaggCCg -3'
miRNA:   3'- -GUUUCGGUUUGacagCCGGUUCGa--GG- -5'
28726 5' -51.2 NC_006146.1 + 148491 0.71 0.888346
Target:  5'- gCGAGGCCGGGCa---GGCCGGGCaggCCg -3'
miRNA:   3'- -GUUUCGGUUUGacagCCGGUUCGa--GG- -5'
28726 5' -51.2 NC_006146.1 + 142335 0.71 0.888346
Target:  5'- gCGAGGCCGGGCa---GGCCGGGCaggCCg -3'
miRNA:   3'- -GUUUCGGUUUGacagCCGGUUCGa--GG- -5'
28726 5' -51.2 NC_006146.1 + 95505 0.71 0.894578
Target:  5'- gAAGGCCuccauauccggGAGCUGUCgggugcggcgccuGGCCAGGgUCCc -3'
miRNA:   3'- gUUUCGG-----------UUUGACAG-------------CCGGUUCgAGG- -5'
28726 5' -51.2 NC_006146.1 + 149444 0.71 0.895259
Target:  5'- -uAGGCCGAgaGCUugCGGCUcAGCUCCg -3'
miRNA:   3'- guUUCGGUU--UGAcaGCCGGuUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 18994 0.71 0.895259
Target:  5'- cCGGAGCCAGACcccagUGggGGCCcccucGAGUUCCa -3'
miRNA:   3'- -GUUUCGGUUUG-----ACagCCGG-----UUCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.