Results 21 - 40 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28726 | 5' | -51.2 | NC_006146.1 | + | 98952 | 0.71 | 0.908345 |
Target: 5'- aCGAAGCCcaggacAAACUcGUCGGCaUAGGC-CCa -3' miRNA: 3'- -GUUUCGG------UUUGA-CAGCCG-GUUCGaGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 149444 | 0.71 | 0.895259 |
Target: 5'- -uAGGCCGAgaGCUugCGGCUcAGCUCCg -3' miRNA: 3'- guUUCGGUU--UGAcaGCCGGuUCGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 42907 | 0.74 | 0.778864 |
Target: 5'- cUAGGGCCucugucccGGCUGUCagcagcggcGCCAAGCUCCg -3' miRNA: 3'- -GUUUCGGu-------UUGACAGc--------CGGUUCGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 22207 | 0.78 | 0.582779 |
Target: 5'- gGGAGUCAGAgaGUCGGCCuAGGC-CCg -3' miRNA: 3'- gUUUCGGUUUgaCAGCCGG-UUCGaGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 67037 | 0.7 | 0.941537 |
Target: 5'- gGGAGCC-GACaGUCGGCCGGGaCggagaCCa -3' miRNA: 3'- gUUUCGGuUUGaCAGCCGGUUC-Ga----GG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 57868 | 0.71 | 0.914513 |
Target: 5'- cCGAGGCCGAcgucCUGcCGGgCGucuGCUCCa -3' miRNA: 3'- -GUUUCGGUUu---GACaGCCgGUu--CGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 128274 | 0.72 | 0.881193 |
Target: 5'- uGAGGCCcacGGCgg-CGGCCGAGCcCCa -3' miRNA: 3'- gUUUCGGu--UUGacaGCCGGUUCGaGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 19129 | 0.78 | 0.582779 |
Target: 5'- gGGAGUCAGAgaGUCGGCCuAGGC-CCg -3' miRNA: 3'- gUUUCGGUUUgaCAGCCGG-UUCGaGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 170375 | 0.71 | 0.914513 |
Target: 5'- aGAGGCC-GugUGUggaGGCCGGGcCUCCc -3' miRNA: 3'- gUUUCGGuUugACAg--CCGGUUC-GAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 16051 | 0.78 | 0.582779 |
Target: 5'- gGGAGUCAGAgaGUCGGCCuAGGC-CCg -3' miRNA: 3'- gUUUCGGUUUgaCAGCCGG-UUCGaGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 95505 | 0.71 | 0.894578 |
Target: 5'- gAAGGCCuccauauccggGAGCUGUCgggugcggcgccuGGCCAGGgUCCc -3' miRNA: 3'- gUUUCGG-----------UUUGACAG-------------CCGGUUCgAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 167580 | 0.71 | 0.914513 |
Target: 5'- aGAGGCC-GugUGUggaGGCCGGGcCUCCc -3' miRNA: 3'- gUUUCGGuUugACAg--CCGGUUC-GAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 117252 | 0.72 | 0.850275 |
Target: 5'- cCGGGGCCAGGgggGUCGGC-AGGUUCCc -3' miRNA: 3'- -GUUUCGGUUUga-CAGCCGgUUCGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 46596 | 0.74 | 0.78838 |
Target: 5'- uCAuGGCCacgaugGggUUGUCGGCCAGGUcuUCCa -3' miRNA: 3'- -GUuUCGG------UuuGACAGCCGGUUCG--AGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 4913 | 0.77 | 0.635488 |
Target: 5'- aCAGAGCCGGacccucGCUGUCggguGGCCGuGCUCUg -3' miRNA: 3'- -GUUUCGGUU------UGACAG----CCGGUuCGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 25285 | 0.78 | 0.582779 |
Target: 5'- gGGAGUCAGAgaGUCGGCCuAGGC-CCg -3' miRNA: 3'- gUUUCGGUUUgaCAGCCGG-UUCGaGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 94397 | 0.69 | 0.946182 |
Target: 5'- uGGAGCCAGG-UGUgGGCCGugaGGCUUg -3' miRNA: 3'- gUUUCGGUUUgACAgCCGGU---UCGAGg -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 156919 | 0.7 | 0.941537 |
Target: 5'- cCGAGGCCuGGgUGgCGGCgcugaCGGGCUCCg -3' miRNA: 3'- -GUUUCGGuUUgACaGCCG-----GUUCGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 128141 | 0.7 | 0.931491 |
Target: 5'- ---cGCCugcacCUGUCGGCCcuGCUgCCg -3' miRNA: 3'- guuuCGGuuu--GACAGCCGGuuCGA-GG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 46741 | 0.7 | 0.920427 |
Target: 5'- gGAGGCCAcGCU---GGCCAGGgUCCu -3' miRNA: 3'- gUUUCGGUuUGAcagCCGGUUCgAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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