miRNA display CGI


Results 41 - 60 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28726 5' -51.2 NC_006146.1 + 142100 0.7 0.940095
Target:  5'- gAAAGCUggGCUGccccaagugagcccUCGGCCccaggguauGCUCCc -3'
miRNA:   3'- gUUUCGGuuUGAC--------------AGCCGGuu-------CGAGG- -5'
28726 5' -51.2 NC_006146.1 + 128274 0.72 0.881193
Target:  5'- uGAGGCCcacGGCgg-CGGCCGAGCcCCa -3'
miRNA:   3'- gUUUCGGu--UUGacaGCCGGUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 19129 0.78 0.582779
Target:  5'- gGGAGUCAGAgaGUCGGCCuAGGC-CCg -3'
miRNA:   3'- gUUUCGGUUUgaCAGCCGG-UUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 41356 0.7 0.936641
Target:  5'- cCAGGGCCuGGCgGUggUGGCCGuGGCUCUg -3'
miRNA:   3'- -GUUUCGGuUUGaCA--GCCGGU-UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 16051 0.78 0.582779
Target:  5'- gGGAGUCAGAgaGUCGGCCuAGGC-CCg -3'
miRNA:   3'- gUUUCGGUUUgaCAGCCGG-UUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 9297 0.68 0.968944
Target:  5'- --uAGCaCAuACUGcCGGCCGGGCagcauuugcuaUCCg -3'
miRNA:   3'- guuUCG-GUuUGACaGCCGGUUCG-----------AGG- -5'
28726 5' -51.2 NC_006146.1 + 25285 0.78 0.582779
Target:  5'- gGGAGUCAGAgaGUCGGCCuAGGC-CCg -3'
miRNA:   3'- gUUUCGGUUUgaCAGCCGG-UUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 45242 0.68 0.967045
Target:  5'- gGAGGCUggGgugUUGUCGGCCGAuuggaacccguccccGCUCa -3'
miRNA:   3'- gUUUCGGuuU---GACAGCCGGUU---------------CGAGg -5'
28726 5' -51.2 NC_006146.1 + 28017 0.69 0.96086
Target:  5'- -cAGGCCAGGCcaccuuagaccCGGCCAGGCcCCa -3'
miRNA:   3'- guUUCGGUUUGaca--------GCCGGUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 47640 0.69 0.95863
Target:  5'- -cGAGCCGucuCUGgccgCGGCCcGGC-CCa -3'
miRNA:   3'- guUUCGGUuu-GACa---GCCGGuUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 68750 0.69 0.954724
Target:  5'- gGAGGCCcag--GU-GGCCAAGCUUCa -3'
miRNA:   3'- gUUUCGGuuugaCAgCCGGUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 94397 0.69 0.946182
Target:  5'- uGGAGCCAGG-UGUgGGCCGugaGGCUUg -3'
miRNA:   3'- gUUUCGGUUUgACAgCCGGU---UCGAGg -5'
28726 5' -51.2 NC_006146.1 + 156919 0.7 0.941537
Target:  5'- cCGAGGCCuGGgUGgCGGCgcugaCGGGCUCCg -3'
miRNA:   3'- -GUUUCGGuUUgACaGCCG-----GUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 99385 0.7 0.931491
Target:  5'- uGAGGCCcagGAGCgaGUCGGCCAGGggggugCCg -3'
miRNA:   3'- gUUUCGG---UUUGa-CAGCCGGUUCga----GG- -5'
28726 5' -51.2 NC_006146.1 + 170375 0.71 0.914513
Target:  5'- aGAGGCC-GugUGUggaGGCCGGGcCUCCc -3'
miRNA:   3'- gUUUCGGuUugACAg--CCGGUUC-GAGG- -5'
28726 5' -51.2 NC_006146.1 + 98952 0.71 0.908345
Target:  5'- aCGAAGCCcaggacAAACUcGUCGGCaUAGGC-CCa -3'
miRNA:   3'- -GUUUCGG------UUUGA-CAGCCG-GUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 149444 0.71 0.895259
Target:  5'- -uAGGCCGAgaGCUugCGGCUcAGCUCCg -3'
miRNA:   3'- guUUCGGUU--UGAcaGCCGGuUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 117252 0.72 0.850275
Target:  5'- cCGGGGCCAGGgggGUCGGC-AGGUUCCc -3'
miRNA:   3'- -GUUUCGGUUUga-CAGCCGgUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 46596 0.74 0.78838
Target:  5'- uCAuGGCCacgaugGggUUGUCGGCCAGGUcuUCCa -3'
miRNA:   3'- -GUuUCGG------UuuGACAGCCGGUUCG--AGG- -5'
28726 5' -51.2 NC_006146.1 + 4913 0.77 0.635488
Target:  5'- aCAGAGCCGGacccucGCUGUCggguGGCCGuGCUCUg -3'
miRNA:   3'- -GUUUCGGUU------UGACAG----CCGGUuCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.