miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28726 5' -51.2 NC_006146.1 + 168639 1.03 0.020065
Target:  5'- uCAAAGCCAAACUGUCGGCCAAGC-CCa -3'
miRNA:   3'- -GUUUCGGUUUGACAGCCGGUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 56084 0.83 0.323614
Target:  5'- -cGGGCCAAguaGgUGUCGGCCAccAGCUCCu -3'
miRNA:   3'- guUUCGGUU---UgACAGCCGGU--UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 122809 0.79 0.520834
Target:  5'- cCGAGGCCGcGCUGUCGGCCGccgugAGCg-- -3'
miRNA:   3'- -GUUUCGGUuUGACAGCCGGU-----UCGagg -5'
28726 5' -51.2 NC_006146.1 + 25285 0.78 0.582779
Target:  5'- gGGAGUCAGAgaGUCGGCCuAGGC-CCg -3'
miRNA:   3'- gUUUCGGUUUgaCAGCCGG-UUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 16051 0.78 0.582779
Target:  5'- gGGAGUCAGAgaGUCGGCCuAGGC-CCg -3'
miRNA:   3'- gUUUCGGUUUgaCAGCCGG-UUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 19129 0.78 0.582779
Target:  5'- gGGAGUCAGAgaGUCGGCCuAGGC-CCg -3'
miRNA:   3'- gUUUCGGUUUgaCAGCCGG-UUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 22207 0.78 0.582779
Target:  5'- gGGAGUCAGAgaGUCGGCCuAGGC-CCg -3'
miRNA:   3'- gUUUCGGUUUgaCAGCCGG-UUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 28363 0.78 0.582779
Target:  5'- gGGAGUCAGAgaGUCGGCCuAGGC-CCg -3'
miRNA:   3'- gUUUCGGUUUgaCAGCCGG-UUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 12973 0.77 0.603804
Target:  5'- uGGAGUCAGAgaGUCGGCCuAGGC-CCg -3'
miRNA:   3'- gUUUCGGUUUgaCAGCCGG-UUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 4913 0.77 0.635488
Target:  5'- aCAGAGCCGGacccucGCUGUCggguGGCCGuGCUCUg -3'
miRNA:   3'- -GUUUCGGUU------UGACAG----CCGGUuCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 102035 0.76 0.656611
Target:  5'- uCAGGGCCAGGCUGUCG-CCAGccuGCUUg -3'
miRNA:   3'- -GUUUCGGUUUGACAGCcGGUU---CGAGg -5'
28726 5' -51.2 NC_006146.1 + 89072 0.75 0.708886
Target:  5'- uGGAGCCu-GCUGguguugUGGCCAcGGCUCCu -3'
miRNA:   3'- gUUUCGGuuUGACa-----GCCGGU-UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 168598 0.75 0.719172
Target:  5'- --uGGCCugGAACUGUCggaaggagGGCCuGGCUCCg -3'
miRNA:   3'- guuUCGG--UUUGACAG--------CCGGuUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 67782 0.75 0.719172
Target:  5'- --cGGCCAggGACgUGacggCGGCCAGGCUCUg -3'
miRNA:   3'- guuUCGGU--UUG-ACa---GCCGGUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 94169 0.75 0.729379
Target:  5'- -uGGGCCuccacgAAGCUGUCGGCCucGAGCgugUCCa -3'
miRNA:   3'- guUUCGG------UUUGACAGCCGG--UUCG---AGG- -5'
28726 5' -51.2 NC_006146.1 + 43519 0.74 0.749513
Target:  5'- -cGGGCCAGGCUGcCGGCCAccaucaguggGGUgUCCg -3'
miRNA:   3'- guUUCGGUUUGACaGCCGGU----------UCG-AGG- -5'
28726 5' -51.2 NC_006146.1 + 103140 0.74 0.749513
Target:  5'- --uGGCCGAGCUGggggaGGUCuuuGGCUCCu -3'
miRNA:   3'- guuUCGGUUUGACag---CCGGu--UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 109322 0.74 0.769207
Target:  5'- gGAAGCCu-GCUGcaCGGCCGagccaaacAGCUCCu -3'
miRNA:   3'- gUUUCGGuuUGACa-GCCGGU--------UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 125358 0.74 0.778864
Target:  5'- gGAGGCCAGGg---CGGCCAAGC-CCa -3'
miRNA:   3'- gUUUCGGUUUgacaGCCGGUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 42907 0.74 0.778864
Target:  5'- cUAGGGCCucugucccGGCUGUCagcagcggcGCCAAGCUCCg -3'
miRNA:   3'- -GUUUCGGu-------UUGACAGc--------CGGUUCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.