miRNA display CGI


Results 81 - 100 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28726 5' -51.2 NC_006146.1 + 76500 0.67 0.979654
Target:  5'- ---uGCCAAGCcucaCGGCCcacaccuGGCUCCa -3'
miRNA:   3'- guuuCGGUUUGaca-GCCGGu------UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 54305 0.67 0.979654
Target:  5'- gGAAGC--GACgUGU-GGCCAGGCUCa -3'
miRNA:   3'- gUUUCGguUUG-ACAgCCGGUUCGAGg -5'
28726 5' -51.2 NC_006146.1 + 151905 0.68 0.977281
Target:  5'- gGGGGCCcccACUGg-GGUCuGGCUCCg -3'
miRNA:   3'- gUUUCGGuu-UGACagCCGGuUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 103871 0.68 0.977281
Target:  5'- --cGGCC-GACUGUCGGCUcccggacacgcGGCUCa -3'
miRNA:   3'- guuUCGGuUUGACAGCCGGu----------UCGAGg -5'
28726 5' -51.2 NC_006146.1 + 55500 0.68 0.974976
Target:  5'- --cGGCCGccAGCUGccuccugcacgcgagCGGCCAgggccuccAGCUCCg -3'
miRNA:   3'- guuUCGGU--UUGACa--------------GCCGGU--------UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 12862 0.68 0.97471
Target:  5'- uGGGGCgAGGCUGggUGGCUggGCaggCCg -3'
miRNA:   3'- gUUUCGgUUUGACa-GCCGGuuCGa--GG- -5'
28726 5' -51.2 NC_006146.1 + 93922 0.68 0.97471
Target:  5'- gGAGGCguagaAGGCgg-CGGCgGGGCUCCg -3'
miRNA:   3'- gUUUCGg----UUUGacaGCCGgUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 64156 0.68 0.97471
Target:  5'- uCAGGGCCucGgaGUCuGCCAGGCUg- -3'
miRNA:   3'- -GUUUCGGuuUgaCAGcCGGUUCGAgg -5'
28726 5' -51.2 NC_006146.1 + 53490 0.68 0.971933
Target:  5'- uCAGGGCCGGGg-GUgCGGUCuGGCUCUg -3'
miRNA:   3'- -GUUUCGGUUUgaCA-GCCGGuUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 115410 0.68 0.971933
Target:  5'- gGAGGCa--GCUGgCGGCCGGGcCUCg -3'
miRNA:   3'- gUUUCGguuUGACaGCCGGUUC-GAGg -5'
28726 5' -51.2 NC_006146.1 + 52711 0.68 0.971933
Target:  5'- gGAGGUCAGgggGCgGcCGGCCAgaaAGCUCUu -3'
miRNA:   3'- gUUUCGGUU---UGaCaGCCGGU---UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 45442 0.68 0.968944
Target:  5'- uGAAGUgGAACUGUaGGUCAGGCa-- -3'
miRNA:   3'- gUUUCGgUUUGACAgCCGGUUCGagg -5'
28726 5' -51.2 NC_006146.1 + 90417 0.68 0.968944
Target:  5'- uCAAGGCCGGAUUGcCGcaacguGUCAuGGCUCCc -3'
miRNA:   3'- -GUUUCGGUUUGACaGC------CGGU-UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 9297 0.68 0.968944
Target:  5'- --uAGCaCAuACUGcCGGCCGGGCagcauuugcuaUCCg -3'
miRNA:   3'- guuUCG-GUuUGACaGCCGGUUCG-----------AGG- -5'
28726 5' -51.2 NC_006146.1 + 123028 0.68 0.968944
Target:  5'- cCGAGGCCGAGg---CGGCCcAGgUCCg -3'
miRNA:   3'- -GUUUCGGUUUgacaGCCGGuUCgAGG- -5'
28726 5' -51.2 NC_006146.1 + 52818 0.68 0.968633
Target:  5'- aCGAGGCCGugcccagGAUgcgGagGGCCGAGCcgCCg -3'
miRNA:   3'- -GUUUCGGU-------UUGa--CagCCGGUUCGa-GG- -5'
28726 5' -51.2 NC_006146.1 + 67598 0.68 0.968633
Target:  5'- -uGGGCCAGauagacguagcgcACgagGUCGGCCGAGg-CCa -3'
miRNA:   3'- guUUCGGUU-------------UGa--CAGCCGGUUCgaGG- -5'
28726 5' -51.2 NC_006146.1 + 45242 0.68 0.967045
Target:  5'- gGAGGCUggGgugUUGUCGGCCGAuuggaacccguccccGCUCa -3'
miRNA:   3'- gUUUCGGuuU---GACAGCCGGUU---------------CGAGg -5'
28726 5' -51.2 NC_006146.1 + 65070 0.69 0.962299
Target:  5'- gCAgcGCCuccggaUGUCGGCCGGGgaCCc -3'
miRNA:   3'- -GUuuCGGuuug--ACAGCCGGUUCgaGG- -5'
28726 5' -51.2 NC_006146.1 + 155723 0.69 0.962299
Target:  5'- --cGGCCGcGCaGUCGGCCuucAGCgcuUCCa -3'
miRNA:   3'- guuUCGGUuUGaCAGCCGGu--UCG---AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.