miRNA display CGI


Results 61 - 80 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28726 5' -51.2 NC_006146.1 + 47526 0.67 0.983648
Target:  5'- --cAGCCAggUUGcggggccccCGGCCAgcgccagAGCUCCc -3'
miRNA:   3'- guuUCGGUuuGACa--------GCCGGU-------UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 47640 0.69 0.95863
Target:  5'- -cGAGCCGucuCUGgccgCGGCCcGGC-CCa -3'
miRNA:   3'- guUUCGGUuu-GACa---GCCGGuUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 48340 0.69 0.944815
Target:  5'- -uGGGCCAGGCguccaGUCuGGCCAgcgggccggccucgAGUUCCg -3'
miRNA:   3'- guUUCGGUUUGa----CAG-CCGGU--------------UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 48863 0.66 0.991457
Target:  5'- ---cGCgAAGCcGUCGGCCuccAGGCgCCa -3'
miRNA:   3'- guuuCGgUUUGaCAGCCGG---UUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 49480 0.73 0.824851
Target:  5'- gAGGGCCGcGgUGUCGGCCAGGggCg -3'
miRNA:   3'- gUUUCGGUuUgACAGCCGGUUCgaGg -5'
28726 5' -51.2 NC_006146.1 + 49552 0.71 0.901926
Target:  5'- gGAGGCCAcGC---CGGCCAGGC-CCa -3'
miRNA:   3'- gUUUCGGUuUGacaGCCGGUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 52485 0.69 0.95863
Target:  5'- --cGGCCAggGACUGgacgaCGGCCGAGUUg- -3'
miRNA:   3'- guuUCGGU--UUGACa----GCCGGUUCGAgg -5'
28726 5' -51.2 NC_006146.1 + 52711 0.68 0.971933
Target:  5'- gGAGGUCAGgggGCgGcCGGCCAgaaAGCUCUu -3'
miRNA:   3'- gUUUCGGUU---UGaCaGCCGGU---UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 52818 0.68 0.968633
Target:  5'- aCGAGGCCGugcccagGAUgcgGagGGCCGAGCcgCCg -3'
miRNA:   3'- -GUUUCGGU-------UUGa--CagCCGGUUCGa-GG- -5'
28726 5' -51.2 NC_006146.1 + 53490 0.68 0.971933
Target:  5'- uCAGGGCCGGGg-GUgCGGUCuGGCUCUg -3'
miRNA:   3'- -GUUUCGGUUUgaCA-GCCGGuUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 54305 0.67 0.979654
Target:  5'- gGAAGC--GACgUGU-GGCCAGGCUCa -3'
miRNA:   3'- gUUUCGguUUG-ACAgCCGGUUCGAGg -5'
28726 5' -51.2 NC_006146.1 + 55500 0.68 0.974976
Target:  5'- --cGGCCGccAGCUGccuccugcacgcgagCGGCCAgggccuccAGCUCCg -3'
miRNA:   3'- guuUCGGU--UUGACa--------------GCCGGU--------UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 55682 0.67 0.985671
Target:  5'- gAAGGCCAGcACgGgcaCGGCCGccgccggggGGCUCUg -3'
miRNA:   3'- gUUUCGGUU-UGaCa--GCCGGU---------UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 56084 0.83 0.323614
Target:  5'- -cGGGCCAAguaGgUGUCGGCCAccAGCUCCu -3'
miRNA:   3'- guUUCGGUU---UgACAGCCGGU--UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 57868 0.71 0.914513
Target:  5'- cCGAGGCCGAcgucCUGcCGGgCGucuGCUCCa -3'
miRNA:   3'- -GUUUCGGUUu---GACaGCCgGUu--CGAGG- -5'
28726 5' -51.2 NC_006146.1 + 59863 0.66 0.992564
Target:  5'- uCAGGGagGAGgUGUC-GCCAucAGCUCCg -3'
miRNA:   3'- -GUUUCggUUUgACAGcCGGU--UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 60789 0.67 0.985671
Target:  5'- gGGAGCCGGACcagGUCcagGGCCu-GgUCCg -3'
miRNA:   3'- gUUUCGGUUUGa--CAG---CCGGuuCgAGG- -5'
28726 5' -51.2 NC_006146.1 + 61192 0.71 0.908345
Target:  5'- ---uGCCAGACacgGUCauGGCgGAGCUCUg -3'
miRNA:   3'- guuuCGGUUUGa--CAG--CCGgUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 61591 0.66 0.990223
Target:  5'- aAGAGCC-GGCUGcagCGGCCGcGGCcggggCCg -3'
miRNA:   3'- gUUUCGGuUUGACa--GCCGGU-UCGa----GG- -5'
28726 5' -51.2 NC_006146.1 + 64156 0.68 0.97471
Target:  5'- uCAGGGCCucGgaGUCuGCCAGGCUg- -3'
miRNA:   3'- -GUUUCGGuuUgaCAGcCGGUUCGAgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.