miRNA display CGI


Results 61 - 80 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28728 3' -61.2 NC_006146.1 + 33375 0.75 0.252033
Target:  5'- uCCGCcgGGCCGcUGCCCCGCUCCgGGUGg -3'
miRNA:   3'- -GGUG--UUGGCcGUGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 34103 0.72 0.373513
Target:  5'- gCCGCGACCcagcGCGCCCCGUUCacgGGgGa -3'
miRNA:   3'- -GGUGUUGGc---CGUGGGGCGAGga-CCgC- -5'
28728 3' -61.2 NC_006146.1 + 39380 0.66 0.749471
Target:  5'- cCCAC--UCGGCGCCCgGUUacCCUGGg- -3'
miRNA:   3'- -GGUGuuGGCCGUGGGgCGA--GGACCgc -5'
28728 3' -61.2 NC_006146.1 + 39690 0.7 0.492051
Target:  5'- uCCugGGCCuGCAgCgCCGCUCCggaGGCa -3'
miRNA:   3'- -GGugUUGGcCGUgG-GGCGAGGa--CCGc -5'
28728 3' -61.2 NC_006146.1 + 40109 0.7 0.519705
Target:  5'- aCCGgAGCCGGCG-CCUGUUUCUGGg- -3'
miRNA:   3'- -GGUgUUGGCCGUgGGGCGAGGACCgc -5'
28728 3' -61.2 NC_006146.1 + 40887 0.68 0.615408
Target:  5'- aCGgAGCCGGgGCCUCGUcugcgaUCCgGGCGc -3'
miRNA:   3'- gGUgUUGGCCgUGGGGCG------AGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 40989 0.66 0.721551
Target:  5'- gCCGC-GCCGGCGCCCCag----GGCGc -3'
miRNA:   3'- -GGUGuUGGCCGUGGGGcgaggaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 41863 0.66 0.702577
Target:  5'- -gGCuACCGGgGCCUCGUgaagagguUUCUGGCGu -3'
miRNA:   3'- ggUGuUGGCCgUGGGGCG--------AGGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 42065 0.66 0.758601
Target:  5'- gCCugGcCgGGCuuaCCUGCUCCUGGa- -3'
miRNA:   3'- -GGugUuGgCCGug-GGGCGAGGACCgc -5'
28728 3' -61.2 NC_006146.1 + 42718 0.66 0.758601
Target:  5'- cCCGCucggGCUGGCAgCCgCGgaUCCgGGCGg -3'
miRNA:   3'- -GGUGu---UGGCCGUgGG-GCg-AGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 43702 0.69 0.567045
Target:  5'- gCCACua-CGGCGUCCaGgUCCUGGCGg -3'
miRNA:   3'- -GGUGuugGCCGUGGGgCgAGGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 44031 0.66 0.721551
Target:  5'- -gGCGGCCGaGgGCCCCGCUUUUuuaGCGa -3'
miRNA:   3'- ggUGUUGGC-CgUGGGGCGAGGAc--CGC- -5'
28728 3' -61.2 NC_006146.1 + 47297 0.66 0.702577
Target:  5'- cCUGCAGCCGGgACUCCucccgggcCUCCUGGa- -3'
miRNA:   3'- -GGUGUUGGCCgUGGGGc-------GAGGACCgc -5'
28728 3' -61.2 NC_006146.1 + 47542 0.67 0.693006
Target:  5'- cCCcCGGCCaGCGCCagaGCUCCcucGGCGa -3'
miRNA:   3'- -GGuGUUGGcCGUGGgg-CGAGGa--CCGC- -5'
28728 3' -61.2 NC_006146.1 + 48249 0.72 0.413624
Target:  5'- gCGCGGagGGC-CCCCGCcgccgUCCUGGCGc -3'
miRNA:   3'- gGUGUUggCCGuGGGGCG-----AGGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 48499 0.69 0.538476
Target:  5'- uCCGCGugagggucuCCaGCACCuCCGCguUCCUGGCc -3'
miRNA:   3'- -GGUGUu--------GGcCGUGG-GGCG--AGGACCGc -5'
28728 3' -61.2 NC_006146.1 + 50290 0.66 0.698755
Target:  5'- aCACGACCgaggggaaguugguGGUccagaagACCCCGCUCCUGu-- -3'
miRNA:   3'- gGUGUUGG--------------CCG-------UGGGGCGAGGACcgc -5'
28728 3' -61.2 NC_006146.1 + 53334 0.66 0.730938
Target:  5'- uCCACAcGCCGGCccauACCCUGaacagCCUGaauGCGg -3'
miRNA:   3'- -GGUGU-UGGCCG----UGGGGCga---GGAC---CGC- -5'
28728 3' -61.2 NC_006146.1 + 54010 0.72 0.405391
Target:  5'- cUCAgGGCCGGCACCagguggCGcCUCCggagGGCGg -3'
miRNA:   3'- -GGUgUUGGCCGUGGg-----GC-GAGGa---CCGC- -5'
28728 3' -61.2 NC_006146.1 + 55701 0.66 0.702577
Target:  5'- gCCGCcGCCGGggggcuCugCCCGC-CgCUGGCc -3'
miRNA:   3'- -GGUGuUGGCC------GugGGGCGaG-GACCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.