miRNA display CGI


Results 41 - 60 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28728 3' -61.2 NC_006146.1 + 23173 0.7 0.501196
Target:  5'- cUCGCGGCCcGCuauuacccagGCCCCGCcgccuUCCUGGCc -3'
miRNA:   3'- -GGUGUUGGcCG----------UGGGGCG-----AGGACCGc -5'
28728 3' -61.2 NC_006146.1 + 23283 0.66 0.721551
Target:  5'- cCCGCAgGCCaGGCcCUCCGUccucCCUGGCc -3'
miRNA:   3'- -GGUGU-UGG-CCGuGGGGCGa---GGACCGc -5'
28728 3' -61.2 NC_006146.1 + 23437 0.74 0.321257
Target:  5'- aCCACAAgcuCCGGCugCCCGuCUcggccuacgaggcCCUGGCc -3'
miRNA:   3'- -GGUGUU---GGCCGugGGGC-GA-------------GGACCGc -5'
28728 3' -61.2 NC_006146.1 + 23520 0.66 0.721551
Target:  5'- cCCGCcgugAACuCGGgACuCCCGUgUCUGGCGg -3'
miRNA:   3'- -GGUG----UUG-GCCgUG-GGGCGaGGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 23766 0.66 0.730938
Target:  5'- gCCGCGGCCgagaauGGCGgCCUGCgcgUCUGGgGc -3'
miRNA:   3'- -GGUGUUGG------CCGUgGGGCGa--GGACCgC- -5'
28728 3' -61.2 NC_006146.1 + 24384 0.67 0.683388
Target:  5'- uCCAgGGCgCGGCGCCuUCGCUCUccgGGUu -3'
miRNA:   3'- -GGUgUUG-GCCGUGG-GGCGAGGa--CCGc -5'
28728 3' -61.2 NC_006146.1 + 25494 0.71 0.465096
Target:  5'- gCC-CGGCCuGCccgGCCUCGCUCCgGGCGc -3'
miRNA:   3'- -GGuGUUGGcCG---UGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 25504 0.66 0.740247
Target:  5'- gCUACAACCccUACCCCaagaGCaCCUGGCGc -3'
miRNA:   3'- -GGUGUUGGccGUGGGG----CGaGGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 25579 0.68 0.622219
Target:  5'- aCCAgGggACCGGCGCCCCagaGCcccucggguccgccUCCaGGCGu -3'
miRNA:   3'- -GGUgU--UGGCCGUGGGG---CG--------------AGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 26361 0.66 0.721551
Target:  5'- cCCGCAgGCCaGGCcCUCCGUccucCCUGGCc -3'
miRNA:   3'- -GGUGU-UGG-CCGuGGGGCGa---GGACCGc -5'
28728 3' -61.2 NC_006146.1 + 28572 0.71 0.465096
Target:  5'- gCC-CGGCCuGCccgGCCUCGCUCCgGGCGc -3'
miRNA:   3'- -GGuGUUGGcCG---UGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 28657 0.68 0.622219
Target:  5'- aCCAgGggACCGGCGCCCCagaGCcccucggguccgccUCCaGGCGu -3'
miRNA:   3'- -GGUgU--UGGCCGUGGGG---CG--------------AGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 29439 0.66 0.721551
Target:  5'- cCCGCAgGCCaGGCcCUCCGUccucCCUGGCc -3'
miRNA:   3'- -GGUGU-UGG-CCGuGGGGCGa---GGACCGc -5'
28728 3' -61.2 NC_006146.1 + 31539 0.66 0.758601
Target:  5'- -aACAGCaGGCACCCC-C-CCcGGCGc -3'
miRNA:   3'- ggUGUUGgCCGUGGGGcGaGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 32779 0.7 0.473997
Target:  5'- cCCAucCAGCCGGCugccuauCCCCGCagcaccUCCUuGGCu -3'
miRNA:   3'- -GGU--GUUGGCCGu------GGGGCG------AGGA-CCGc -5'
28728 3' -61.2 NC_006146.1 + 32923 0.66 0.758601
Target:  5'- cCCACcccGCCGGC-CCCCGggaggCCcGGCc -3'
miRNA:   3'- -GGUGu--UGGCCGuGGGGCga---GGaCCGc -5'
28728 3' -61.2 NC_006146.1 + 33093 0.67 0.654337
Target:  5'- gCACcgGACCGGCGgacCCCCGaagcggaUCC-GGCGg -3'
miRNA:   3'- gGUG--UUGGCCGU---GGGGCg------AGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 33117 0.73 0.350004
Target:  5'- gCCGcCGGCgGGUucgccgggccgcuGCCCCGCUCCgGGUGg -3'
miRNA:   3'- -GGU-GUUGgCCG-------------UGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 33185 0.66 0.712095
Target:  5'- gCCGCcGCuCGGUccuggGCCUCcggguGCUCCUGGUGc -3'
miRNA:   3'- -GGUGuUG-GCCG-----UGGGG-----CGAGGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 33253 0.75 0.252033
Target:  5'- uCCGCcgGGCCGcUGCCCCGCUCCgGGUGg -3'
miRNA:   3'- -GGUG--UUGGCcGUGGGGCGAGGaCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.