miRNA display CGI


Results 41 - 60 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28728 3' -61.2 NC_006146.1 + 1616 0.72 0.389238
Target:  5'- cCCGCc-CCGGgACCCCGCg-CUGGCc -3'
miRNA:   3'- -GGUGuuGGCCgUGGGGCGagGACCGc -5'
28728 3' -61.2 NC_006146.1 + 3480 0.72 0.389238
Target:  5'- cCCGCc-CCGGgACCCCGCg-CUGGCc -3'
miRNA:   3'- -GGUGuuGGCCgUGGGGCGagGACCGc -5'
28728 3' -61.2 NC_006146.1 + 685 0.72 0.389238
Target:  5'- cCCGCc-CCGGgACCCCGCg-CUGGCc -3'
miRNA:   3'- -GGUGuuGGCCgUGGGGCGagGACCGc -5'
28728 3' -61.2 NC_006146.1 + 2548 0.72 0.389238
Target:  5'- cCCGCc-CCGGgACCCCGCg-CUGGCc -3'
miRNA:   3'- -GGUGuuGGCCgUGGGGCGagGACCGc -5'
28728 3' -61.2 NC_006146.1 + 54010 0.72 0.405391
Target:  5'- cUCAgGGCCGGCACCagguggCGcCUCCggagGGCGg -3'
miRNA:   3'- -GGUgUUGGCCGUGGg-----GC-GAGGa---CCGC- -5'
28728 3' -61.2 NC_006146.1 + 125486 0.72 0.413624
Target:  5'- aCC-CGGCCGGgGCCUCGCg-CUGGCc -3'
miRNA:   3'- -GGuGUUGGCCgUGGGGCGagGACCGc -5'
28728 3' -61.2 NC_006146.1 + 48249 0.72 0.413624
Target:  5'- gCGCGGagGGC-CCCCGCcgccgUCCUGGCGc -3'
miRNA:   3'- gGUGUUggCCGuGGGGCG-----AGGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 149111 0.71 0.430396
Target:  5'- gCGCGcCCGGCAUCCCGCUg--GGCu -3'
miRNA:   3'- gGUGUuGGCCGUGGGGCGAggaCCGc -5'
28728 3' -61.2 NC_006146.1 + 158825 0.71 0.430396
Target:  5'- aCACGGCCGGgGCCCgGC-CCUcGCa -3'
miRNA:   3'- gGUGUUGGCCgUGGGgCGaGGAcCGc -5'
28728 3' -61.2 NC_006146.1 + 12257 0.71 0.438929
Target:  5'- gCGCAgagGCCGGacgaugaGCCCCGCUacaccuaCUGGCa -3'
miRNA:   3'- gGUGU---UGGCCg------UGGGGCGAg------GACCGc -5'
28728 3' -61.2 NC_006146.1 + 123372 0.71 0.447559
Target:  5'- gCGCuGGCCgGGgGCCCCGCaaCCUGGCu -3'
miRNA:   3'- gGUG-UUGG-CCgUGGGGCGa-GGACCGc -5'
28728 3' -61.2 NC_006146.1 + 124451 0.71 0.447559
Target:  5'- aCGCAuCCGGCcuacGCCgCCGCcuUCCUGGgGg -3'
miRNA:   3'- gGUGUuGGCCG----UGG-GGCG--AGGACCgC- -5'
28728 3' -61.2 NC_006146.1 + 15336 0.71 0.456282
Target:  5'- cCCugG-CgGGCGCCCCGCgcgagCCcGGCu -3'
miRNA:   3'- -GGugUuGgCCGUGGGGCGa----GGaCCGc -5'
28728 3' -61.2 NC_006146.1 + 25494 0.71 0.465096
Target:  5'- gCC-CGGCCuGCccgGCCUCGCUCCgGGCGc -3'
miRNA:   3'- -GGuGUUGGcCG---UGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 22416 0.71 0.465096
Target:  5'- gCC-CGGCCuGCccgGCCUCGCUCCgGGCGc -3'
miRNA:   3'- -GGuGUUGGcCG---UGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 19338 0.71 0.465096
Target:  5'- gCC-CGGCCuGCccgGCCUCGCUCCgGGCGc -3'
miRNA:   3'- -GGuGUUGGcCG---UGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 16260 0.71 0.465096
Target:  5'- gCC-CGGCCuGCccgGCCUCGCUCCgGGCGc -3'
miRNA:   3'- -GGuGUUGGcCG---UGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 13182 0.71 0.465096
Target:  5'- gCC-CGGCCuGCccgGCCUCGCUCCgGGCGc -3'
miRNA:   3'- -GGuGUUGGcCG---UGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 28572 0.71 0.465096
Target:  5'- gCC-CGGCCuGCccgGCCUCGCUCCgGGCGc -3'
miRNA:   3'- -GGuGUUGGcCG---UGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 155481 0.7 0.473103
Target:  5'- aCUGCAGCCGGgccaGCCCCuCUgaggccaCCUGGCGu -3'
miRNA:   3'- -GGUGUUGGCCg---UGGGGcGA-------GGACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.