Results 21 - 40 of 215 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28728 | 3' | -61.2 | NC_006146.1 | + | 135853 | 0.73 | 0.328983 |
Target: 5'- cCCugGGuCCGcUGCCCCGCUCC-GGCGg -3' miRNA: 3'- -GGugUU-GGCcGUGGGGCGAGGaCCGC- -5' |
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28728 | 3' | -61.2 | NC_006146.1 | + | 135760 | 0.73 | 0.328983 |
Target: 5'- cCCugGGuCCGcUGCCCCGCUCC-GGCGg -3' miRNA: 3'- -GGugUU-GGCcGUGGGGCGAGGaCCGC- -5' |
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28728 | 3' | -61.2 | NC_006146.1 | + | 135482 | 0.73 | 0.328983 |
Target: 5'- cCCugGGuCCGcUGCCCCGCUCC-GGCGg -3' miRNA: 3'- -GGugUU-GGCcGUGGGGCGAGGaCCGC- -5' |
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28728 | 3' | -61.2 | NC_006146.1 | + | 135668 | 0.73 | 0.328983 |
Target: 5'- cCCugGGuCCGcUGCCCCGCUCC-GGCGg -3' miRNA: 3'- -GGugUU-GGCcGUGGGGCGAGGaCCGC- -5' |
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28728 | 3' | -61.2 | NC_006146.1 | + | 135389 | 0.73 | 0.328983 |
Target: 5'- cCCugGGuCCGcUGCCCCGCUCC-GGCGg -3' miRNA: 3'- -GGugUU-GGCcGUGGGGCGAGGaCCGC- -5' |
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28728 | 3' | -61.2 | NC_006146.1 | + | 135575 | 0.73 | 0.328983 |
Target: 5'- cCCugGGuCCGcUGCCCCGCUCC-GGCGg -3' miRNA: 3'- -GGugUU-GGCcGUGGGGCGAGGaCCGC- -5' |
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28728 | 3' | -61.2 | NC_006146.1 | + | 135296 | 0.73 | 0.328983 |
Target: 5'- cCCugGGuCCGcUGCCCCGCUCC-GGCGg -3' miRNA: 3'- -GGugUU-GGCcGUGGGGCGAGGaCCGC- -5' |
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28728 | 3' | -61.2 | NC_006146.1 | + | 136318 | 0.73 | 0.328983 |
Target: 5'- cCCugGGuCCGcUGCCCCGCUCC-GGCGg -3' miRNA: 3'- -GGugUU-GGCcGUGGGGCGAGGaCCGC- -5' |
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28728 | 3' | -61.2 | NC_006146.1 | + | 136504 | 0.73 | 0.328983 |
Target: 5'- cCCugGGuCCGcUGCCCCGCUCC-GGCGg -3' miRNA: 3'- -GGugUU-GGCcGUGGGGCGAGGaCCGC- -5' |
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28728 | 3' | -61.2 | NC_006146.1 | + | 136132 | 0.73 | 0.328983 |
Target: 5'- cCCugGGuCCGcUGCCCCGCUCC-GGCGg -3' miRNA: 3'- -GGugUU-GGCcGUGGGGCGAGGaCCGC- -5' |
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28728 | 3' | -61.2 | NC_006146.1 | + | 136597 | 0.73 | 0.328983 |
Target: 5'- cCCugGGuCCGcUGCCCCGCUCC-GGCGg -3' miRNA: 3'- -GGugUU-GGCcGUGGGGCGAGGaCCGC- -5' |
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28728 | 3' | -61.2 | NC_006146.1 | + | 136690 | 0.73 | 0.328983 |
Target: 5'- cCCugGGuCCGcUGCCCCGCUCC-GGCGg -3' miRNA: 3'- -GGugUU-GGCcGUGGGGCGAGGaCCGC- -5' |
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28728 | 3' | -61.2 | NC_006146.1 | + | 136039 | 0.73 | 0.328983 |
Target: 5'- cCCugGGuCCGcUGCCCCGCUCC-GGCGg -3' miRNA: 3'- -GGugUU-GGCcGUGGGGCGAGGaCCGC- -5' |
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28728 | 3' | -61.2 | NC_006146.1 | + | 136411 | 0.73 | 0.328983 |
Target: 5'- cCCugGGuCCGcUGCCCCGCUCC-GGCGg -3' miRNA: 3'- -GGugUU-GGCcGUGGGGCGAGGaCCGC- -5' |
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28728 | 3' | -61.2 | NC_006146.1 | + | 135946 | 0.73 | 0.328983 |
Target: 5'- cCCugGGuCCGcUGCCCCGCUCC-GGCGg -3' miRNA: 3'- -GGugUU-GGCcGUGGGGCGAGGaCCGC- -5' |
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28728 | 3' | -61.2 | NC_006146.1 | + | 33117 | 0.73 | 0.350004 |
Target: 5'- gCCGcCGGCgGGUucgccgggccgcuGCCCCGCUCCgGGUGg -3' miRNA: 3'- -GGU-GUUGgCCG-------------UGGGGCGAGGaCCGC- -5' |
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28728 | 3' | -61.2 | NC_006146.1 | + | 34103 | 0.72 | 0.373513 |
Target: 5'- gCCGCGACCcagcGCGCCCCGUUCacgGGgGa -3' miRNA: 3'- -GGUGUUGGc---CGUGGGGCGAGga-CCgC- -5' |
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28728 | 3' | -61.2 | NC_006146.1 | + | 137934 | 0.72 | 0.373513 |
Target: 5'- gCCGCGACCcagcGCGCCCCGUUCacgGGgGa -3' miRNA: 3'- -GGUGUUGGc---CGUGGGGCGAGga-CCgC- -5' |
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28728 | 3' | -61.2 | NC_006146.1 | + | 157349 | 0.72 | 0.381321 |
Target: 5'- gCGCAGcCCGGCGCCCgGCgCCUGcaGCa -3' miRNA: 3'- gGUGUU-GGCCGUGGGgCGaGGAC--CGc -5' |
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28728 | 3' | -61.2 | NC_006146.1 | + | 2548 | 0.72 | 0.389238 |
Target: 5'- cCCGCc-CCGGgACCCCGCg-CUGGCc -3' miRNA: 3'- -GGUGuuGGCCgUGGGGCGagGACCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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