miRNA display CGI


Results 21 - 40 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28728 3' -61.2 NC_006146.1 + 12257 0.71 0.438929
Target:  5'- gCGCAgagGCCGGacgaugaGCCCCGCUacaccuaCUGGCa -3'
miRNA:   3'- gGUGU---UGGCCg------UGGGGCGAg------GACCGc -5'
28728 3' -61.2 NC_006146.1 + 13182 0.71 0.465096
Target:  5'- gCC-CGGCCuGCccgGCCUCGCUCCgGGCGc -3'
miRNA:   3'- -GGuGUUGGcCG---UGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 13267 0.68 0.622219
Target:  5'- aCCAgGggACCGGCGCCCCagaGCcccucggguccgccUCCaGGCGu -3'
miRNA:   3'- -GGUgU--UGGCCGUGGGG---CG--------------AGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 14049 0.66 0.721551
Target:  5'- cCCGCAgGCCaGGCcCUCCGUccucCCUGGCc -3'
miRNA:   3'- -GGUGU-UGG-CCGuGGGGCGa---GGACCGc -5'
28728 3' -61.2 NC_006146.1 + 14290 0.67 0.683388
Target:  5'- gCGCGugCaGCGCCCUGUcCCUGGa- -3'
miRNA:   3'- gGUGUugGcCGUGGGGCGaGGACCgc -5'
28728 3' -61.2 NC_006146.1 + 14676 0.7 0.477582
Target:  5'- uCCACGGCCgaGGgGgCCCGCgucuccugcaaccaCCUGGCGg -3'
miRNA:   3'- -GGUGUUGG--CCgUgGGGCGa-------------GGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 15336 0.71 0.456282
Target:  5'- cCCugG-CgGGCGCCCCGCgcgagCCcGGCu -3'
miRNA:   3'- -GGugUuGgCCGUGGGGCGa----GGaCCGc -5'
28728 3' -61.2 NC_006146.1 + 16260 0.71 0.465096
Target:  5'- gCC-CGGCCuGCccgGCCUCGCUCCgGGCGc -3'
miRNA:   3'- -GGuGUUGGcCG---UGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 16345 0.68 0.622219
Target:  5'- aCCAgGggACCGGCGCCCCagaGCcccucggguccgccUCCaGGCGu -3'
miRNA:   3'- -GGUgU--UGGCCGUGGGG---CG--------------AGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 17127 0.66 0.721551
Target:  5'- cCCGCAgGCCaGGCcCUCCGUccucCCUGGCc -3'
miRNA:   3'- -GGUGU-UGG-CCGuGGGGCGa---GGACCGc -5'
28728 3' -61.2 NC_006146.1 + 18369 0.66 0.758601
Target:  5'- -gGCAugCu-CACCCUGgUCCUGGUGg -3'
miRNA:   3'- ggUGUugGccGUGGGGCgAGGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 19338 0.71 0.465096
Target:  5'- gCC-CGGCCuGCccgGCCUCGCUCCgGGCGc -3'
miRNA:   3'- -GGuGUUGGcCG---UGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 19423 0.68 0.622219
Target:  5'- aCCAgGggACCGGCGCCCCagaGCcccucggguccgccUCCaGGCGu -3'
miRNA:   3'- -GGUgU--UGGCCGUGGGG---CG--------------AGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 19577 0.66 0.749471
Target:  5'- aCCucuCGGuCCGGCGCgaggaCaGCUCCUGGCc -3'
miRNA:   3'- -GGu--GUU-GGCCGUGg----GgCGAGGACCGc -5'
28728 3' -61.2 NC_006146.1 + 20205 0.66 0.721551
Target:  5'- cCCGCAgGCCaGGCcCUCCGUccucCCUGGCc -3'
miRNA:   3'- -GGUGU-UGG-CCGuGGGGCGa---GGACCGc -5'
28728 3' -61.2 NC_006146.1 + 21256 0.68 0.625139
Target:  5'- gCGCuGCCGGCGCgugcucgaCCUGgUgCUGGCGg -3'
miRNA:   3'- gGUGuUGGCCGUG--------GGGCgAgGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 22416 0.71 0.465096
Target:  5'- gCC-CGGCCuGCccgGCCUCGCUCCgGGCGc -3'
miRNA:   3'- -GGuGUUGGcCG---UGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 22501 0.68 0.622219
Target:  5'- aCCAgGggACCGGCGCCCCagaGCcccucggguccgccUCCaGGCGu -3'
miRNA:   3'- -GGUgU--UGGCCGUGGGG---CG--------------AGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 22815 0.66 0.712095
Target:  5'- aCCugGGCgGGguCUuuGC-CCUGGUGc -3'
miRNA:   3'- -GGugUUGgCCguGGggCGaGGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 22943 0.74 0.301542
Target:  5'- aCCAUccagggaugaaGGCCGGCugCUauCUCCUGGCGg -3'
miRNA:   3'- -GGUG-----------UUGGCCGugGGgcGAGGACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.