miRNA display CGI


Results 21 - 40 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28728 3' -61.2 NC_006146.1 + 150333 0.66 0.721551
Target:  5'- gCGCAgGCCGGCuaguCUgUGCUCCUcuuccGGCGu -3'
miRNA:   3'- gGUGU-UGGCCGu---GGgGCGAGGA-----CCGC- -5'
28728 3' -61.2 NC_006146.1 + 149111 0.71 0.430396
Target:  5'- gCGCGcCCGGCAUCCCGCUg--GGCu -3'
miRNA:   3'- gGUGUuGGCCGUGGGGCGAggaCCGc -5'
28728 3' -61.2 NC_006146.1 + 148558 0.69 0.576658
Target:  5'- cCCAggagaGGCCGG-ACCCCGC--CUGGCGa -3'
miRNA:   3'- -GGUg----UUGGCCgUGGGGCGagGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 147178 0.68 0.586306
Target:  5'- gCGCAgACCGGCGCCCCuucgCCcGGUGc -3'
miRNA:   3'- gGUGU-UGGCCGUGGGGcga-GGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 145480 0.69 0.576658
Target:  5'- cCCAggagaGGCCGG-ACCCCGC--CUGGCGa -3'
miRNA:   3'- -GGUg----UUGGCCgUGGGGCGagGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 142402 0.69 0.576658
Target:  5'- cCCAggagaGGCCGG-ACCCCGC--CUGGCGa -3'
miRNA:   3'- -GGUg----UUGGCCgUGGGGCGagGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 138874 0.67 0.644611
Target:  5'- aCCugGGCCaGCGCCUCGUcCCgaGGCc -3'
miRNA:   3'- -GGugUUGGcCGUGGGGCGaGGa-CCGc -5'
28728 3' -61.2 NC_006146.1 + 137934 0.72 0.373513
Target:  5'- gCCGCGACCcagcGCGCCCCGUUCacgGGgGa -3'
miRNA:   3'- -GGUGUUGGc---CGUGGGGCGAGga-CCgC- -5'
28728 3' -61.2 NC_006146.1 + 137565 0.69 0.547949
Target:  5'- gCCGCuGCCGgguccGCugCCCGgUCCUGGa- -3'
miRNA:   3'- -GGUGuUGGC-----CGugGGGCgAGGACCgc -5'
28728 3' -61.2 NC_006146.1 + 137526 0.73 0.328983
Target:  5'- cCCugGGuCCGcUGCCCCGCUCC-GGCGg -3'
miRNA:   3'- -GGugUU-GGCcGUGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 137472 0.69 0.547949
Target:  5'- gCCGCuGCCGgguccGCugCCCGgUCCUGGa- -3'
miRNA:   3'- -GGUGuUGGC-----CGugGGGCgAGGACCgc -5'
28728 3' -61.2 NC_006146.1 + 137433 0.73 0.328983
Target:  5'- cCCugGGuCCGcUGCCCCGCUCC-GGCGg -3'
miRNA:   3'- -GGugUU-GGCcGUGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 137379 0.69 0.547949
Target:  5'- gCCGCuGCCGgguccGCugCCCGgUCCUGGa- -3'
miRNA:   3'- -GGUGuUGGC-----CGugGGGCgAGGACCgc -5'
28728 3' -61.2 NC_006146.1 + 137340 0.73 0.328983
Target:  5'- cCCugGGuCCGcUGCCCCGCUCC-GGCGg -3'
miRNA:   3'- -GGugUU-GGCcGUGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 137286 0.69 0.547949
Target:  5'- gCCGCuGCCGgguccGCugCCCGgUCCUGGa- -3'
miRNA:   3'- -GGUGuUGGC-----CGugGGGCgAGGACCgc -5'
28728 3' -61.2 NC_006146.1 + 137247 0.73 0.328983
Target:  5'- cCCugGGuCCGcUGCCCCGCUCC-GGCGg -3'
miRNA:   3'- -GGugUU-GGCcGUGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 137193 0.69 0.547949
Target:  5'- gCCGCuGCCGgguccGCugCCCGgUCCUGGa- -3'
miRNA:   3'- -GGUGuUGGC-----CGugGGGCgAGGACCgc -5'
28728 3' -61.2 NC_006146.1 + 137154 0.73 0.328983
Target:  5'- cCCugGGuCCGcUGCCCCGCUCC-GGCGg -3'
miRNA:   3'- -GGugUU-GGCcGUGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 137100 0.69 0.547949
Target:  5'- gCCGCuGCCGgguccGCugCCCGgUCCUGGa- -3'
miRNA:   3'- -GGUGuUGGC-----CGugGGGCgAGGACCgc -5'
28728 3' -61.2 NC_006146.1 + 137061 0.73 0.328983
Target:  5'- cCCugGGuCCGcUGCCCCGCUCC-GGCGg -3'
miRNA:   3'- -GGugUU-GGCcGUGGGGCGAGGaCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.