miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28728 3' -61.2 NC_006146.1 + 170326 0.66 0.712095
Target:  5'- gCCGCGcccCCGGC-CCCU-CUCCUGGg- -3'
miRNA:   3'- -GGUGUu--GGCCGuGGGGcGAGGACCgc -5'
28728 3' -61.2 NC_006146.1 + 169395 0.66 0.712095
Target:  5'- gCCGCGcccCCGGC-CCCU-CUCCUGGg- -3'
miRNA:   3'- -GGUGUu--GGCCGuGGGGcGAGGACCgc -5'
28728 3' -61.2 NC_006146.1 + 168463 0.66 0.712095
Target:  5'- gCCGCGcccCCGGC-CCCU-CUCCUGGg- -3'
miRNA:   3'- -GGUGUu--GGCCGuGGGGcGAGGACCgc -5'
28728 3' -61.2 NC_006146.1 + 168057 1.09 0.001211
Target:  5'- gCCACAACCGGCACCCCGCUCCUGGCGu -3'
miRNA:   3'- -GGUGUUGGCCGUGGGGCGAGGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 167531 0.66 0.712095
Target:  5'- gCCGCGcccCCGGC-CCCU-CUCCUGGg- -3'
miRNA:   3'- -GGUGUu--GGCCGuGGGGcGAGGACCgc -5'
28728 3' -61.2 NC_006146.1 + 165671 0.66 0.712095
Target:  5'- cCCACAgccccgagGCCGGCaaggaccugcACCCCuaGCUCCcccaGGCc -3'
miRNA:   3'- -GGUGU--------UGGCCG----------UGGGG--CGAGGa---CCGc -5'
28728 3' -61.2 NC_006146.1 + 165247 0.67 0.668893
Target:  5'- cCCGCGGCUGGUGcucgucccccugucCCCCGCcauggccaugucCCUGGUGa -3'
miRNA:   3'- -GGUGUUGGCCGU--------------GGGGCGa-----------GGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 162392 0.66 0.740247
Target:  5'- cCCGCGcCCGGgACCCCGgugggCCaggaUGGUGg -3'
miRNA:   3'- -GGUGUuGGCCgUGGGGCga---GG----ACCGC- -5'
28728 3' -61.2 NC_006146.1 + 161202 0.67 0.664046
Target:  5'- -gGCAACUGGCACCCCGUgccCCa---- -3'
miRNA:   3'- ggUGUUGGCCGUGGGGCGa--GGaccgc -5'
28728 3' -61.2 NC_006146.1 + 159406 0.67 0.664046
Target:  5'- uCCACGAUcaugaCGGC-CCCCGagUCCgGGUGg -3'
miRNA:   3'- -GGUGUUG-----GCCGuGGGGCg-AGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 158825 0.71 0.430396
Target:  5'- aCACGGCCGGgGCCCgGC-CCUcGCa -3'
miRNA:   3'- gGUGUUGGCCgUGGGgCGaGGAcCGc -5'
28728 3' -61.2 NC_006146.1 + 157791 0.69 0.576658
Target:  5'- cCCAggagaGGCCGG-ACCCCGC--CUGGCGa -3'
miRNA:   3'- -GGUg----UUGGCCgUGGGGCGagGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 157578 0.7 0.482984
Target:  5'- gCCGCGGCCGaCuCCaCCGC-CCUGGUGc -3'
miRNA:   3'- -GGUGUUGGCcGuGG-GGCGaGGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 157349 0.72 0.381321
Target:  5'- gCGCAGcCCGGCGCCCgGCgCCUGcaGCa -3'
miRNA:   3'- gGUGUU-GGCCGUGGGgCGaGGAC--CGc -5'
28728 3' -61.2 NC_006146.1 + 156795 0.66 0.721551
Target:  5'- gCCAgCAGCCccgaCAUCCCGC-CCUGGgGa -3'
miRNA:   3'- -GGU-GUUGGcc--GUGGGGCGaGGACCgC- -5'
28728 3' -61.2 NC_006146.1 + 155876 0.7 0.501196
Target:  5'- cCCugG-CCaGGCGCCCCuC-CCUGGCa -3'
miRNA:   3'- -GGugUuGG-CCGUGGGGcGaGGACCGc -5'
28728 3' -61.2 NC_006146.1 + 155481 0.7 0.473103
Target:  5'- aCUGCAGCCGGgccaGCCCCuCUgaggccaCCUGGCGu -3'
miRNA:   3'- -GGUGUUGGCCg---UGGGGcGA-------GGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 154713 0.69 0.576658
Target:  5'- cCCAggagaGGCCGG-ACCCCGC--CUGGCGa -3'
miRNA:   3'- -GGUg----UUGGCCgUGGGGCGagGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 153041 0.67 0.654337
Target:  5'- gCC-CAGCUGGC-CCUCGUaggUCUUGGUGu -3'
miRNA:   3'- -GGuGUUGGCCGuGGGGCG---AGGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 151636 0.69 0.576658
Target:  5'- cCCAggagaGGCCGG-ACCCCGC--CUGGCGa -3'
miRNA:   3'- -GGUg----UUGGCCgUGGGGCGagGACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.