miRNA display CGI


Results 21 - 40 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28728 3' -61.2 NC_006146.1 + 25504 0.66 0.740247
Target:  5'- gCUACAACCccUACCCCaagaGCaCCUGGCGc -3'
miRNA:   3'- -GGUGUUGGccGUGGGG----CGaGGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 94632 0.66 0.73932
Target:  5'- aCugGGCCGGguCCaugauggCCGC-CCUGGgGa -3'
miRNA:   3'- gGugUUGGCCguGG-------GGCGaGGACCgC- -5'
28728 3' -61.2 NC_006146.1 + 99891 0.66 0.730938
Target:  5'- gCugAuCCGGCGCCuCUGCcCCccgGGCGc -3'
miRNA:   3'- gGugUuGGCCGUGG-GGCGaGGa--CCGC- -5'
28728 3' -61.2 NC_006146.1 + 98388 0.66 0.730938
Target:  5'- gCCGCAGCCG----UCCGCUCCUccgcaGGCGc -3'
miRNA:   3'- -GGUGUUGGCcgugGGGCGAGGA-----CCGC- -5'
28728 3' -61.2 NC_006146.1 + 53334 0.66 0.730938
Target:  5'- uCCACAcGCCGGCccauACCCUGaacagCCUGaauGCGg -3'
miRNA:   3'- -GGUGU-UGGCCG----UGGGGCga---GGAC---CGC- -5'
28728 3' -61.2 NC_006146.1 + 125765 0.66 0.730938
Target:  5'- aCC-CAGCCcGCaaaGCCCaagGCUCCcGGCGg -3'
miRNA:   3'- -GGuGUUGGcCG---UGGGg--CGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 23766 0.66 0.730938
Target:  5'- gCCGCGGCCgagaauGGCGgCCUGCgcgUCUGGgGc -3'
miRNA:   3'- -GGUGUUGG------CCGUgGGGCGa--GGACCgC- -5'
28728 3' -61.2 NC_006146.1 + 123267 0.66 0.730938
Target:  5'- gCCGCGGCCagagacGGCucgugGCCCUaucgGCgaucCCUGGCGg -3'
miRNA:   3'- -GGUGUUGG------CCG-----UGGGG----CGa---GGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 29439 0.66 0.721551
Target:  5'- cCCGCAgGCCaGGCcCUCCGUccucCCUGGCc -3'
miRNA:   3'- -GGUGU-UGG-CCGuGGGGCGa---GGACCGc -5'
28728 3' -61.2 NC_006146.1 + 26361 0.66 0.721551
Target:  5'- cCCGCAgGCCaGGCcCUCCGUccucCCUGGCc -3'
miRNA:   3'- -GGUGU-UGG-CCGuGGGGCGa---GGACCGc -5'
28728 3' -61.2 NC_006146.1 + 17127 0.66 0.721551
Target:  5'- cCCGCAgGCCaGGCcCUCCGUccucCCUGGCc -3'
miRNA:   3'- -GGUGU-UGG-CCGuGGGGCGa---GGACCGc -5'
28728 3' -61.2 NC_006146.1 + 150333 0.66 0.721551
Target:  5'- gCGCAgGCCGGCuaguCUgUGCUCCUcuuccGGCGu -3'
miRNA:   3'- gGUGU-UGGCCGu---GGgGCGAGGA-----CCGC- -5'
28728 3' -61.2 NC_006146.1 + 44031 0.66 0.721551
Target:  5'- -gGCGGCCGaGgGCCCCGCUUUUuuaGCGa -3'
miRNA:   3'- ggUGUUGGC-CgUGGGGCGAGGAc--CGC- -5'
28728 3' -61.2 NC_006146.1 + 14049 0.66 0.721551
Target:  5'- cCCGCAgGCCaGGCcCUCCGUccucCCUGGCc -3'
miRNA:   3'- -GGUGU-UGG-CCGuGGGGCGa---GGACCGc -5'
28728 3' -61.2 NC_006146.1 + 23520 0.66 0.721551
Target:  5'- cCCGCcgugAACuCGGgACuCCCGUgUCUGGCGg -3'
miRNA:   3'- -GGUG----UUG-GCCgUG-GGGCGaGGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 20205 0.66 0.721551
Target:  5'- cCCGCAgGCCaGGCcCUCCGUccucCCUGGCc -3'
miRNA:   3'- -GGUGU-UGG-CCGuGGGGCGa---GGACCGc -5'
28728 3' -61.2 NC_006146.1 + 23283 0.66 0.721551
Target:  5'- cCCGCAgGCCaGGCcCUCCGUccucCCUGGCc -3'
miRNA:   3'- -GGUGU-UGG-CCGuGGGGCGa---GGACCGc -5'
28728 3' -61.2 NC_006146.1 + 40989 0.66 0.721551
Target:  5'- gCCGC-GCCGGCGCCCCag----GGCGc -3'
miRNA:   3'- -GGUGuUGGCCGUGGGGcgaggaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 156795 0.66 0.721551
Target:  5'- gCCAgCAGCCccgaCAUCCCGC-CCUGGgGa -3'
miRNA:   3'- -GGU-GUUGGcc--GUGGGGCGaGGACCgC- -5'
28728 3' -61.2 NC_006146.1 + 170326 0.66 0.712095
Target:  5'- gCCGCGcccCCGGC-CCCU-CUCCUGGg- -3'
miRNA:   3'- -GGUGUu--GGCCGuGGGGcGAGGACCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.