miRNA display CGI


Results 41 - 60 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28728 3' -61.2 NC_006146.1 + 167531 0.66 0.712095
Target:  5'- gCCGCGcccCCGGC-CCCU-CUCCUGGg- -3'
miRNA:   3'- -GGUGUu--GGCCGuGGGGcGAGGACCgc -5'
28728 3' -61.2 NC_006146.1 + 22815 0.66 0.712095
Target:  5'- aCCugGGCgGGguCUuuGC-CCUGGUGc -3'
miRNA:   3'- -GGugUUGgCCguGGggCGaGGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 165671 0.66 0.712095
Target:  5'- cCCACAgccccgagGCCGGCaaggaccugcACCCCuaGCUCCcccaGGCc -3'
miRNA:   3'- -GGUGU--------UGGCCG----------UGGGG--CGAGGa---CCGc -5'
28728 3' -61.2 NC_006146.1 + 33185 0.66 0.712095
Target:  5'- gCCGCcGCuCGGUccuggGCCUCcggguGCUCCUGGUGc -3'
miRNA:   3'- -GGUGuUG-GCCG-----UGGGG-----CGAGGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 170326 0.66 0.712095
Target:  5'- gCCGCGcccCCGGC-CCCU-CUCCUGGg- -3'
miRNA:   3'- -GGUGUu--GGCCGuGGGGcGAGGACCgc -5'
28728 3' -61.2 NC_006146.1 + 169395 0.66 0.712095
Target:  5'- gCCGCGcccCCGGC-CCCU-CUCCUGGg- -3'
miRNA:   3'- -GGUGUu--GGCCGuGGGGcGAGGACCgc -5'
28728 3' -61.2 NC_006146.1 + 3729 0.66 0.712095
Target:  5'- gCGCGcGCCGGCcUCCCGUcccgaaggcCCUGGCa -3'
miRNA:   3'- gGUGU-UGGCCGuGGGGCGa--------GGACCGc -5'
28728 3' -61.2 NC_006146.1 + 2797 0.66 0.712095
Target:  5'- gCGCGcGCCGGCcUCCCGUcccgaaggcCCUGGCa -3'
miRNA:   3'- gGUGU-UGGCCGuGGGGCGa--------GGACCGc -5'
28728 3' -61.2 NC_006146.1 + 933 0.66 0.712095
Target:  5'- gCGCGcGCCGGCcUCCCGUcccgaaggcCCUGGCa -3'
miRNA:   3'- gGUGU-UGGCCGuGGGGCGa--------GGACCGc -5'
28728 3' -61.2 NC_006146.1 + 1865 0.66 0.712095
Target:  5'- gCGCGcGCCGGCcUCCCGUcccgaaggcCCUGGCa -3'
miRNA:   3'- gGUGU-UGGCCGuGGGGCGa--------GGACCGc -5'
28728 3' -61.2 NC_006146.1 + 9462 0.66 0.708295
Target:  5'- cCCACGcGCCuuGGguUCCCGCggggccacacccgCCUGGCa -3'
miRNA:   3'- -GGUGU-UGG--CCguGGGGCGa------------GGACCGc -5'
28728 3' -61.2 NC_006146.1 + 41863 0.66 0.702577
Target:  5'- -gGCuACCGGgGCCUCGUgaagagguUUCUGGCGu -3'
miRNA:   3'- ggUGuUGGCCgUGGGGCG--------AGGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 47297 0.66 0.702577
Target:  5'- cCUGCAGCCGGgACUCCucccgggcCUCCUGGa- -3'
miRNA:   3'- -GGUGUUGGCCgUGGGGc-------GAGGACCgc -5'
28728 3' -61.2 NC_006146.1 + 55701 0.66 0.702577
Target:  5'- gCCGCcGCCGGggggcuCugCCCGC-CgCUGGCc -3'
miRNA:   3'- -GGUGuUGGCC------GugGGGCGaG-GACCGc -5'
28728 3' -61.2 NC_006146.1 + 11576 0.66 0.702577
Target:  5'- gCACGagacGCCGGCcaGCCUcaacuaCGaCUCCUGGCc -3'
miRNA:   3'- gGUGU----UGGCCG--UGGG------GC-GAGGACCGc -5'
28728 3' -61.2 NC_006146.1 + 60684 0.66 0.702577
Target:  5'- gCgGCuGCCGuCACCCUGCcggagaagaUCCUGGUGu -3'
miRNA:   3'- -GgUGuUGGCcGUGGGGCG---------AGGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 50290 0.66 0.698755
Target:  5'- aCACGACCgaggggaaguugguGGUccagaagACCCCGCUCCUGu-- -3'
miRNA:   3'- gGUGUUGG--------------CCG-------UGGGGCGAGGACcgc -5'
28728 3' -61.2 NC_006146.1 + 119311 0.67 0.693006
Target:  5'- aCGCAACCGGCcucaguCCCCcCUUC-GGCc -3'
miRNA:   3'- gGUGUUGGCCGu-----GGGGcGAGGaCCGc -5'
28728 3' -61.2 NC_006146.1 + 47542 0.67 0.693006
Target:  5'- cCCcCGGCCaGCGCCagaGCUCCcucGGCGa -3'
miRNA:   3'- -GGuGUUGGcCGUGGgg-CGAGGa--CCGC- -5'
28728 3' -61.2 NC_006146.1 + 68011 0.67 0.692046
Target:  5'- aCACGGCCccuGGCGuccCCCUGCggcugcuUCUUGGCGc -3'
miRNA:   3'- gGUGUUGG---CCGU---GGGGCG-------AGGACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.