miRNA display CGI


Results 61 - 80 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28728 3' -61.2 NC_006146.1 + 24384 0.67 0.683388
Target:  5'- uCCAgGGCgCGGCGCCuUCGCUCUccgGGUu -3'
miRNA:   3'- -GGUgUUG-GCCGUGG-GGCGAGGa--CCGc -5'
28728 3' -61.2 NC_006146.1 + 92929 0.67 0.683388
Target:  5'- -gAgGACCGGCACCUCcaaggccaccgGCUCC-GGCc -3'
miRNA:   3'- ggUgUUGGCCGUGGGG-----------CGAGGaCCGc -5'
28728 3' -61.2 NC_006146.1 + 135707 0.67 0.683388
Target:  5'- gCCGCuGCCGGguCCgCUGCccgUCCUGGa- -3'
miRNA:   3'- -GGUGuUGGCCguGG-GGCG---AGGACCgc -5'
28728 3' -61.2 NC_006146.1 + 201 0.67 0.683388
Target:  5'- uCUACGcGCCGGUGCCCCcGCgacggUCCccggGGCGc -3'
miRNA:   3'- -GGUGU-UGGCCGUGGGG-CG-----AGGa---CCGC- -5'
28728 3' -61.2 NC_006146.1 + 14290 0.67 0.683388
Target:  5'- gCGCGugCaGCGCCCUGUcCCUGGa- -3'
miRNA:   3'- gGUGUugGcCGUGGGGCGaGGACCgc -5'
28728 3' -61.2 NC_006146.1 + 117419 0.67 0.683388
Target:  5'- aCCGCAcccccgGCCcugaccgacgaGGCACCCgCGCcUCCcgGGCa -3'
miRNA:   3'- -GGUGU------UGG-----------CCGUGGG-GCG-AGGa-CCGc -5'
28728 3' -61.2 NC_006146.1 + 116867 0.67 0.682424
Target:  5'- aCCACAuccggcccgGCCaGGCGCagcagugCCUGCUCCagGGCu -3'
miRNA:   3'- -GGUGU---------UGG-CCGUG-------GGGCGAGGa-CCGc -5'
28728 3' -61.2 NC_006146.1 + 109312 0.67 0.673733
Target:  5'- gCCGCGGCCGcuGCAgCCgGCUCUuccucagcgUGGCc -3'
miRNA:   3'- -GGUGUUGGC--CGUgGGgCGAGG---------ACCGc -5'
28728 3' -61.2 NC_006146.1 + 128592 0.67 0.673733
Target:  5'- aCUACGACCGGCugUac-UUUCUGGCGc -3'
miRNA:   3'- -GGUGUUGGCCGugGggcGAGGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 749 0.67 0.673733
Target:  5'- cCCcCGGCCGGCGCCgCCGCgcgugcagCC-GaGCGu -3'
miRNA:   3'- -GGuGUUGGCCGUGG-GGCGa-------GGaC-CGC- -5'
28728 3' -61.2 NC_006146.1 + 3544 0.67 0.673733
Target:  5'- cCCcCGGCCGGCGCCgCCGCgcgugcagCC-GaGCGu -3'
miRNA:   3'- -GGuGUUGGCCGUGG-GGCGa-------GGaC-CGC- -5'
28728 3' -61.2 NC_006146.1 + 2612 0.67 0.673733
Target:  5'- cCCcCGGCCGGCGCCgCCGCgcgugcagCC-GaGCGu -3'
miRNA:   3'- -GGuGUUGGCCGUGG-GGCGa-------GGaC-CGC- -5'
28728 3' -61.2 NC_006146.1 + 1680 0.67 0.673733
Target:  5'- cCCcCGGCCGGCGCCgCCGCgcgugcagCC-GaGCGu -3'
miRNA:   3'- -GGuGUUGGCCGUGG-GGCGa-------GGaC-CGC- -5'
28728 3' -61.2 NC_006146.1 + 127419 0.67 0.671798
Target:  5'- gCCGgAGCCGGUgucaacgGCCgccgaggaggcugCCGCUCCagaugUGGCGg -3'
miRNA:   3'- -GGUgUUGGCCG-------UGG-------------GGCGAGG-----ACCGC- -5'
28728 3' -61.2 NC_006146.1 + 165247 0.67 0.668893
Target:  5'- cCCGCGGCUGGUGcucgucccccugucCCCCGCcauggccaugucCCUGGUGa -3'
miRNA:   3'- -GGUGUUGGCCGU--------------GGGGCGa-----------GGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 161202 0.67 0.664046
Target:  5'- -gGCAACUGGCACCCCGUgccCCa---- -3'
miRNA:   3'- ggUGUUGGCCGUGGGGCGa--GGaccgc -5'
28728 3' -61.2 NC_006146.1 + 159406 0.67 0.664046
Target:  5'- uCCACGAUcaugaCGGC-CCCCGagUCCgGGUGg -3'
miRNA:   3'- -GGUGUUG-----GCCGuGGGGCg-AGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 125940 0.67 0.664046
Target:  5'- aCCGCGGucgagucccCCGGgGccuCCCCGCgccCCUGGCc -3'
miRNA:   3'- -GGUGUU---------GGCCgU---GGGGCGa--GGACCGc -5'
28728 3' -61.2 NC_006146.1 + 153041 0.67 0.654337
Target:  5'- gCC-CAGCUGGC-CCUCGUaggUCUUGGUGu -3'
miRNA:   3'- -GGuGUUGGCCGuGGGGCG---AGGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 33093 0.67 0.654337
Target:  5'- gCACcgGACCGGCGgacCCCCGaagcggaUCC-GGCGg -3'
miRNA:   3'- gGUG--UUGGCCGU---GGGGCg------AGGaCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.