miRNA display CGI


Results 41 - 60 of 215 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28728 3' -61.2 NC_006146.1 + 54010 0.72 0.405391
Target:  5'- cUCAgGGCCGGCACCagguggCGcCUCCggagGGCGg -3'
miRNA:   3'- -GGUgUUGGCCGUGGg-----GC-GAGGa---CCGC- -5'
28728 3' -61.2 NC_006146.1 + 136504 0.73 0.328983
Target:  5'- cCCugGGuCCGcUGCCCCGCUCC-GGCGg -3'
miRNA:   3'- -GGugUU-GGCcGUGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 33375 0.75 0.252033
Target:  5'- uCCGCcgGGCCGcUGCCCCGCUCCgGGUGg -3'
miRNA:   3'- -GGUG--UUGGCcGUGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 157349 0.72 0.381321
Target:  5'- gCGCAGcCCGGCGCCCgGCgCCUGcaGCa -3'
miRNA:   3'- gGUGUU-GGCCGUGGGgCGaGGAC--CGc -5'
28728 3' -61.2 NC_006146.1 + 33253 0.75 0.252033
Target:  5'- uCCGCcgGGCCGcUGCCCCGCUCCgGGUGg -3'
miRNA:   3'- -GGUG--UUGGCcGUGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 135428 0.69 0.547949
Target:  5'- gCCGCuGCCGgguccGCugCCCGgUCCUGGa- -3'
miRNA:   3'- -GGUGuUGGC-----CGugGGGCgAGGACCgc -5'
28728 3' -61.2 NC_006146.1 + 135296 0.73 0.328983
Target:  5'- cCCugGGuCCGcUGCCCCGCUCC-GGCGg -3'
miRNA:   3'- -GGugUU-GGCcGUGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 135149 0.69 0.547949
Target:  5'- gCCGCuGCCGgguccGCugCCCGgUCCUGGa- -3'
miRNA:   3'- -GGUGuUGGC-----CGugGGGCgAGGACCgc -5'
28728 3' -61.2 NC_006146.1 + 120022 0.69 0.52906
Target:  5'- cCCGCGGCCaguccgGGCacagACCCCGCgcggagaCUGGUGg -3'
miRNA:   3'- -GGUGUUGG------CCG----UGGGGCGag-----GACCGC- -5'
28728 3' -61.2 NC_006146.1 + 157578 0.7 0.482984
Target:  5'- gCCGCGGCCGaCuCCaCCGC-CCUGGUGc -3'
miRNA:   3'- -GGUGUUGGCcGuGG-GGCGaGGACCGC- -5'
28728 3' -61.2 NC_006146.1 + 28572 0.71 0.465096
Target:  5'- gCC-CGGCCuGCccgGCCUCGCUCCgGGCGc -3'
miRNA:   3'- -GGuGUUGGcCG---UGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 16260 0.71 0.465096
Target:  5'- gCC-CGGCCuGCccgGCCUCGCUCCgGGCGc -3'
miRNA:   3'- -GGuGUUGGcCG---UGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 158825 0.71 0.430396
Target:  5'- aCACGGCCGGgGCCCgGC-CCUcGCa -3'
miRNA:   3'- gGUGUUGGCCgUGGGgCGaGGAcCGc -5'
28728 3' -61.2 NC_006146.1 + 33117 0.73 0.350004
Target:  5'- gCCGcCGGCgGGUucgccgggccgcuGCCCCGCUCCgGGUGg -3'
miRNA:   3'- -GGU-GUUGgCCG-------------UGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 137340 0.73 0.328983
Target:  5'- cCCugGGuCCGcUGCCCCGCUCC-GGCGg -3'
miRNA:   3'- -GGugUU-GGCcGUGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 136968 0.73 0.328983
Target:  5'- cCCugGGuCCGcUGCCCCGCUCC-GGCGg -3'
miRNA:   3'- -GGugUU-GGCcGUGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 136690 0.73 0.328983
Target:  5'- cCCugGGuCCGcUGCCCCGCUCC-GGCGg -3'
miRNA:   3'- -GGugUU-GGCcGUGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 136225 0.73 0.328983
Target:  5'- cCCugGGuCCGcUGCCCCGCUCC-GGCGg -3'
miRNA:   3'- -GGugUU-GGCcGUGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 135946 0.73 0.328983
Target:  5'- cCCugGGuCCGcUGCCCCGCUCC-GGCGg -3'
miRNA:   3'- -GGugUU-GGCcGUGGGGCGAGGaCCGC- -5'
28728 3' -61.2 NC_006146.1 + 135575 0.73 0.328983
Target:  5'- cCCugGGuCCGcUGCCCCGCUCC-GGCGg -3'
miRNA:   3'- -GGugUU-GGCcGUGGGGCGAGGaCCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.