miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28728 5' -58.8 NC_006146.1 + 150902 0.68 0.674925
Target:  5'- gGCCGCCggGGUCccuccGGccGGCCUGaUGg -3'
miRNA:   3'- -UGGCGGaaCCAGa----CCuuCCGGACgAC- -5'
28728 5' -58.8 NC_006146.1 + 147824 0.68 0.674925
Target:  5'- gGCCGCCggGGUCccuccGGccGGCCUGaUGg -3'
miRNA:   3'- -UGGCGGaaCCAGa----CCuuCCGGACgAC- -5'
28728 5' -58.8 NC_006146.1 + 150533 0.66 0.790332
Target:  5'- gGCgGCUgggGGUCgGGcuGGCCUGCc- -3'
miRNA:   3'- -UGgCGGaa-CCAGaCCuuCCGGACGac -5'
28728 5' -58.8 NC_006146.1 + 168095 1.08 0.001722
Target:  5'- cACCGCCUUGGUCUGGAAGGCCUGCUGg -3'
miRNA:   3'- -UGGCGGAACCAGACCUUCCGGACGAC- -5'
28728 5' -58.8 NC_006146.1 + 142357 0.68 0.681937
Target:  5'- gGCCggGUCUUGGgcCUGGGAGguccgggguguugaGCCUGCUGc -3'
miRNA:   3'- -UGG--CGGAACCa-GACCUUC--------------CGGACGAC- -5'
28728 5' -58.8 NC_006146.1 + 145435 0.68 0.681937
Target:  5'- gGCCggGUCUUGGgcCUGGGAGguccgggguguugaGCCUGCUGc -3'
miRNA:   3'- -UGG--CGGAACCa-GACCUUC--------------CGGACGAC- -5'
28728 5' -58.8 NC_006146.1 + 148513 0.68 0.681937
Target:  5'- gGCCggGUCUUGGgcCUGGGAGguccgggguguugaGCCUGCUGc -3'
miRNA:   3'- -UGG--CGGAACCa-GACCUUC--------------CGGACGAC- -5'
28728 5' -58.8 NC_006146.1 + 153611 0.66 0.790332
Target:  5'- gGCgGCUgggGGUCgGGcuGGCCUGCc- -3'
miRNA:   3'- -UGgCGGaa-CCAGaCCuuCCGGACGac -5'
28728 5' -58.8 NC_006146.1 + 147455 0.66 0.790332
Target:  5'- gGCgGCUgggGGUCgGGcuGGCCUGCc- -3'
miRNA:   3'- -UGgCGGaa-CCAGaCCuuCCGGACGac -5'
28728 5' -58.8 NC_006146.1 + 39995 0.66 0.781271
Target:  5'- uGCgGCCcguaguggccGGUgUGGGcguagcaggGGGCCUGCUGg -3'
miRNA:   3'- -UGgCGGaa--------CCAgACCU---------UCCGGACGAC- -5'
28728 5' -58.8 NC_006146.1 + 96744 0.66 0.772079
Target:  5'- cCCGCaccGGUUUGaAGGuGCCUGCUGa -3'
miRNA:   3'- uGGCGgaaCCAGACcUUC-CGGACGAC- -5'
28728 5' -58.8 NC_006146.1 + 156023 0.67 0.714681
Target:  5'- --gGCCUggGGcCUcGGAGGGCCUGgaGg -3'
miRNA:   3'- uggCGGAa-CCaGA-CCUUCCGGACgaC- -5'
28728 5' -58.8 NC_006146.1 + 152945 0.67 0.714681
Target:  5'- --gGCCUggGGcCUcGGAGGGCCUGgaGg -3'
miRNA:   3'- uggCGGAa-CCaGA-CCUUCCGGACgaC- -5'
28728 5' -58.8 NC_006146.1 + 149867 0.67 0.714681
Target:  5'- --gGCCUggGGcCUcGGAGGGCCUGgaGg -3'
miRNA:   3'- uggCGGAa-CCaGA-CCUUCCGGACgaC- -5'
28728 5' -58.8 NC_006146.1 + 146789 0.67 0.714681
Target:  5'- --gGCCUggGGcCUcGGAGGGCCUGgaGg -3'
miRNA:   3'- uggCGGAa-CCaGA-CCUUCCGGACgaC- -5'
28728 5' -58.8 NC_006146.1 + 147938 0.68 0.684936
Target:  5'- gGCUGCCggGGUCccuccGGccGGCCUGgUGg -3'
miRNA:   3'- -UGGCGGaaCCAGa----CCuuCCGGACgAC- -5'
28728 5' -58.8 NC_006146.1 + 144860 0.68 0.684936
Target:  5'- gGCUGCCggGGUCccuccGGccGGCCUGgUGg -3'
miRNA:   3'- -UGGCGGaaCCAGa----CCuuCCGGACgAC- -5'
28728 5' -58.8 NC_006146.1 + 141782 0.68 0.684936
Target:  5'- gGCUGCCggGGUCccuccGGccGGCCUGgUGg -3'
miRNA:   3'- -UGGCGGaaCCAGa----CCuuCCGGACgAC- -5'
28728 5' -58.8 NC_006146.1 + 157746 0.68 0.681937
Target:  5'- gGCCggGUCUUGGgcCUGGGAGguccgggguguugaGCCUGCUGc -3'
miRNA:   3'- -UGG--CGGAACCa-GACCUUC--------------CGGACGAC- -5'
28728 5' -58.8 NC_006146.1 + 151591 0.68 0.681937
Target:  5'- gGCCggGUCUUGGgcCUGGGAGguccgggguguugaGCCUGCUGc -3'
miRNA:   3'- -UGG--CGGAACCa-GACCUUC--------------CGGACGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.