Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28728 | 5' | -58.8 | NC_006146.1 | + | 100278 | 0.67 | 0.734182 |
Target: 5'- aGCCuCCUagcgGGggCUGGcAGGCCUGCa- -3' miRNA: 3'- -UGGcGGAa---CCa-GACCuUCCGGACGac -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 120832 | 0.74 | 0.332033 |
Target: 5'- uGCCGCacaagcgcuucCUGGAGGGCCUGCUGg -3' miRNA: 3'- -UGGCGgaacca-----GACCUUCCGGACGAC- -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 123311 | 0.66 | 0.808031 |
Target: 5'- gGCCGCCgagUGGaUCcGGGAcGUCUGCg- -3' miRNA: 3'- -UGGCGGa--ACC-AGaCCUUcCGGACGac -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 125613 | 0.69 | 0.644719 |
Target: 5'- --gGUCUUGGUCUGGcGGGCCUcagggGCa- -3' miRNA: 3'- uggCGGAACCAGACCuUCCGGA-----CGac -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 127213 | 0.68 | 0.674925 |
Target: 5'- -aCGCCguagUGGccuUCUcGGAGGGCCUGgaGc -3' miRNA: 3'- ugGCGGa---ACC---AGA-CCUUCCGGACgaC- -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 134614 | 0.69 | 0.611399 |
Target: 5'- aGCCGCCUUG--CUGGugaauccaagcaucAAGGCCUucGCUGg -3' miRNA: 3'- -UGGCGGAACcaGACC--------------UUCCGGA--CGAC- -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 141299 | 0.66 | 0.790332 |
Target: 5'- gGCgGCUgggGGUCgGGcuGGCCUGCc- -3' miRNA: 3'- -UGgCGGaa-CCAGaCCuuCCGGACGac -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 141669 | 0.68 | 0.674925 |
Target: 5'- gGCCGCCggGGUCccuccGGccGGCCUGaUGg -3' miRNA: 3'- -UGGCGGaaCCAGa----CCuuCCGGACgAC- -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 141782 | 0.68 | 0.684936 |
Target: 5'- gGCUGCCggGGUCccuccGGccGGCCUGgUGg -3' miRNA: 3'- -UGGCGGaaCCAGa----CCuuCCGGACgAC- -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 142357 | 0.68 | 0.681937 |
Target: 5'- gGCCggGUCUUGGgcCUGGGAGguccgggguguugaGCCUGCUGc -3' miRNA: 3'- -UGG--CGGAACCa-GACCUUC--------------CGGACGAC- -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 143711 | 0.68 | 0.694905 |
Target: 5'- --aGCCUggGGcCUcGGAGGGCCUGgaGg -3' miRNA: 3'- uggCGGAa-CCaGA-CCUUCCGGACgaC- -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 144377 | 0.66 | 0.790332 |
Target: 5'- gGCgGCUgggGGUCgGGcuGGCCUGCc- -3' miRNA: 3'- -UGgCGGaa-CCAGaCCuuCCGGACGac -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 144746 | 0.68 | 0.674925 |
Target: 5'- gGCCGCCggGGUCccuccGGccGGCCUGaUGg -3' miRNA: 3'- -UGGCGGaaCCAGa----CCuuCCGGACgAC- -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 144860 | 0.68 | 0.684936 |
Target: 5'- gGCUGCCggGGUCccuccGGccGGCCUGgUGg -3' miRNA: 3'- -UGGCGGaaCCAGa----CCuuCCGGACgAC- -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 145435 | 0.68 | 0.681937 |
Target: 5'- gGCCggGUCUUGGgcCUGGGAGguccgggguguugaGCCUGCUGc -3' miRNA: 3'- -UGG--CGGAACCa-GACCUUC--------------CGGACGAC- -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 146789 | 0.67 | 0.714681 |
Target: 5'- --gGCCUggGGcCUcGGAGGGCCUGgaGg -3' miRNA: 3'- uggCGGAa-CCaGA-CCUUCCGGACgaC- -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 147455 | 0.66 | 0.790332 |
Target: 5'- gGCgGCUgggGGUCgGGcuGGCCUGCc- -3' miRNA: 3'- -UGgCGGaa-CCAGaCCuuCCGGACGac -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 147824 | 0.68 | 0.674925 |
Target: 5'- gGCCGCCggGGUCccuccGGccGGCCUGaUGg -3' miRNA: 3'- -UGGCGGaaCCAGa----CCuuCCGGACgAC- -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 147938 | 0.68 | 0.684936 |
Target: 5'- gGCUGCCggGGUCccuccGGccGGCCUGgUGg -3' miRNA: 3'- -UGGCGGaaCCAGa----CCuuCCGGACgAC- -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 148513 | 0.68 | 0.681937 |
Target: 5'- gGCCggGUCUUGGgcCUGGGAGguccgggguguugaGCCUGCUGc -3' miRNA: 3'- -UGG--CGGAACCa-GACCUUC--------------CGGACGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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