Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28728 | 5' | -58.8 | NC_006146.1 | + | 3793 | 0.66 | 0.775771 |
Target: 5'- -aCGCCUUuguggcccacagucaGGUCUGGGucAGGCCagGCg- -3' miRNA: 3'- ugGCGGAA---------------CCAGACCU--UCCGGa-CGac -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 15965 | 0.67 | 0.734182 |
Target: 5'- gGCCgGUCUcgGGUCUGG-GGGUCUGUg- -3' miRNA: 3'- -UGG-CGGAa-CCAGACCuUCCGGACGac -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 23781 | 0.66 | 0.808031 |
Target: 5'- gGCgGCCUgcgcGUCUGG--GGCCcGCUGa -3' miRNA: 3'- -UGgCGGAac--CAGACCuuCCGGaCGAC- -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 33240 | 0.67 | 0.743808 |
Target: 5'- gGCCGCCggcgGGUCcGccGGGCC-GCUGc -3' miRNA: 3'- -UGGCGGaa--CCAGaCcuUCCGGaCGAC- -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 33362 | 0.67 | 0.743808 |
Target: 5'- gGCCGCCggugGGUCcGccGGGCC-GCUGc -3' miRNA: 3'- -UGGCGGaa--CCAGaCcuUCCGGaCGAC- -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 39074 | 0.68 | 0.66488 |
Target: 5'- cGCCgGCCUccGGUCUGGGgaAGGCCaggGCc- -3' miRNA: 3'- -UGG-CGGAa-CCAGACCU--UCCGGa--CGac -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 39662 | 0.74 | 0.332033 |
Target: 5'- gACUGCCUUGGcCuUGGAggcggcgggcuccuGGGCCUGCa- -3' miRNA: 3'- -UGGCGGAACCaG-ACCU--------------UCCGGACGac -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 39995 | 0.66 | 0.781271 |
Target: 5'- uGCgGCCcguaguggccGGUgUGGGcguagcaggGGGCCUGCUGg -3' miRNA: 3'- -UGgCGGaa--------CCAgACCU---------UCCGGACGAC- -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 41577 | 0.71 | 0.515286 |
Target: 5'- gGCCGCCUacUGG-CUGGccgaggcggaGAGGCCcgggggGCUGg -3' miRNA: 3'- -UGGCGGA--ACCaGACC----------UUCCGGa-----CGAC- -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 46598 | 0.68 | 0.654808 |
Target: 5'- cACCauugGCC-UGGccCUGGAAGaGCCUGUUGa -3' miRNA: 3'- -UGG----CGGaACCa-GACCUUC-CGGACGAC- -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 48197 | 0.68 | 0.704823 |
Target: 5'- cGCCGaCUUGGcauccggggaCUGGAGGGCCUgGCg- -3' miRNA: 3'- -UGGCgGAACCa---------GACCUUCCGGA-CGac -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 51168 | 0.72 | 0.432 |
Target: 5'- cGCCGCUgugGGUgUGGAaggGGGUCUGCg- -3' miRNA: 3'- -UGGCGGaa-CCAgACCU---UCCGGACGac -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 57048 | 0.68 | 0.694905 |
Target: 5'- aGCCGCCagGGUUgaggcgGGAggGGGCCUGaCg- -3' miRNA: 3'- -UGGCGGaaCCAGa-----CCU--UCCGGAC-Gac -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 64730 | 0.66 | 0.799255 |
Target: 5'- uGCagaGCCcUGcGuUCUGGAuGGCCUGCa- -3' miRNA: 3'- -UGg--CGGaAC-C-AGACCUuCCGGACGac -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 70143 | 0.66 | 0.772079 |
Target: 5'- uGCCGCCUUcGcCUGGcuccuGGCCggggcGCUGg -3' miRNA: 3'- -UGGCGGAAcCaGACCuu---CCGGa----CGAC- -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 71863 | 0.66 | 0.799255 |
Target: 5'- cCCGCCg-GGccCUGGggGGCCU-CUa -3' miRNA: 3'- uGGCGGaaCCa-GACCuuCCGGAcGAc -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 72323 | 0.69 | 0.62452 |
Target: 5'- gGCC-CCUuucUGGUCUGGcauGAGGCCUucGCUu -3' miRNA: 3'- -UGGcGGA---ACCAGACC---UUCCGGA--CGAc -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 85912 | 0.67 | 0.714681 |
Target: 5'- aGCCGCggggcuuuaccCUggGGcCUGGAuGGCCUGCg- -3' miRNA: 3'- -UGGCG-----------GAa-CCaGACCUuCCGGACGac -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 96744 | 0.66 | 0.772079 |
Target: 5'- cCCGCaccGGUUUGaAGGuGCCUGCUGa -3' miRNA: 3'- uGGCGgaaCCAGACcUUC-CGGACGAC- -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 99307 | 0.68 | 0.654808 |
Target: 5'- cCCGCC-UGGUCaGGGccAGaCCUGCUGc -3' miRNA: 3'- uGGCGGaACCAGaCCU--UCcGGACGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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