miRNA display CGI


Results 81 - 100 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28729 3' -62.4 NC_006146.1 + 49676 0.66 0.618391
Target:  5'- aGggGGGCUAUgGCGGCgucguccuccuccacCCucuCCAGGGGCc -3'
miRNA:   3'- aCuuCCCGGUG-CGCCG---------------GG---GGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 10751 0.66 0.618391
Target:  5'- --cGGGGCCAUGCGGCuacaucuacuucuacCCCCu--GGCc -3'
miRNA:   3'- acuUCCCGGUGCGCCG---------------GGGGucuCUG- -5'
28729 3' -62.4 NC_006146.1 + 130954 0.66 0.61447
Target:  5'- gGAcccGGGGUgCugGCGGaaCUCCAGAGAUg -3'
miRNA:   3'- aCU---UCCCG-GugCGCCg-GGGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 72518 0.66 0.61447
Target:  5'- cGGAGGaGCgGacggcUGCGGCUCUCGGGGAg -3'
miRNA:   3'- aCUUCC-CGgU-----GCGCCGGGGGUCUCUg -5'
28729 3' -62.4 NC_006146.1 + 57843 0.66 0.61447
Target:  5'- uUGAAGgucaaGGCCaACGUGGaCCCC-GAGGCc -3'
miRNA:   3'- -ACUUC-----CCGG-UGCGCCgGGGGuCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 137680 0.66 0.61447
Target:  5'- --cGGcGGCCACcCGGCugCCCCGGAGcACc -3'
miRNA:   3'- acuUC-CCGGUGcGCCG--GGGGUCUC-UG- -5'
28729 3' -62.4 NC_006146.1 + 137558 0.66 0.61447
Target:  5'- --cGGcGGCCACcCGGCugCCCCGGAGcACc -3'
miRNA:   3'- acuUC-CCGGUGcGCCG--GGGGUCUC-UG- -5'
28729 3' -62.4 NC_006146.1 + 39980 0.66 0.61447
Target:  5'- aGAGGcugaGGCUGCuGCGGCCCgUAGuGGCc -3'
miRNA:   3'- aCUUC----CCGGUG-CGCCGGGgGUCuCUG- -5'
28729 3' -62.4 NC_006146.1 + 85642 0.66 0.61447
Target:  5'- aGAcAGGGgCugGuUGGCCCaCGGGGACc -3'
miRNA:   3'- aCU-UCCCgGugC-GCCGGGgGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 12183 0.66 0.61447
Target:  5'- -cGGGGGCCuCG-GGCUCCUAcaacGAGACg -3'
miRNA:   3'- acUUCCCGGuGCgCCGGGGGU----CUCUG- -5'
28729 3' -62.4 NC_006146.1 + 159280 0.66 0.61349
Target:  5'- ---cGGGCCuCGgGGCCCUcgcagucggcaaaCAGGGGCc -3'
miRNA:   3'- acuuCCCGGuGCgCCGGGG-------------GUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 142289 0.66 0.604678
Target:  5'- aGAGGGGCagaGCcagccaGCGGCUgaaCCCgaGGAGGCg -3'
miRNA:   3'- aCUUCCCGg--UG------CGCCGG---GGG--UCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 145367 0.66 0.604678
Target:  5'- aGAGGGGCagaGCcagccaGCGGCUgaaCCCgaGGAGGCg -3'
miRNA:   3'- aCUUCCCGg--UG------CGCCGG---GGG--UCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 148445 0.66 0.604678
Target:  5'- aGAGGGGCagaGCcagccaGCGGCUgaaCCCgaGGAGGCg -3'
miRNA:   3'- aCUUCCCGg--UG------CGCCGG---GGG--UCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 151523 0.66 0.604678
Target:  5'- aGAGGGGCagaGCcagccaGCGGCUgaaCCCgaGGAGGCg -3'
miRNA:   3'- aCUUCCCGg--UG------CGCCGG---GGG--UCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 154601 0.66 0.604678
Target:  5'- aGAGGGGCagaGCcagccaGCGGCUgaaCCCgaGGAGGCg -3'
miRNA:   3'- aCUUCCCGg--UG------CGCCGG---GGG--UCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 3797 0.66 0.604678
Target:  5'- gGggGGGgCACGCGggggauggccacGCCCCCcucacuuuuuuGGAGcCg -3'
miRNA:   3'- aCuuCCCgGUGCGC------------CGGGGG-----------UCUCuG- -5'
28729 3' -62.4 NC_006146.1 + 169165 0.67 0.594904
Target:  5'- gGAGGGGCCG-GC-GCCUgCAGGGGg -3'
miRNA:   3'- aCUUCCCGGUgCGcCGGGgGUCUCUg -5'
28729 3' -62.4 NC_006146.1 + 46711 0.67 0.594904
Target:  5'- aGAGucGGCCGCgGCGGCUCCgAGgcGGGCg -3'
miRNA:   3'- aCUUc-CCGGUG-CGCCGGGGgUC--UCUG- -5'
28729 3' -62.4 NC_006146.1 + 55339 0.67 0.594904
Target:  5'- cGAguAGGGCCGCGgucgccucCaGCCCCCGccaccgcgcgcGGGACg -3'
miRNA:   3'- aCU--UCCCGGUGC--------GcCGGGGGU-----------CUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.