miRNA display CGI


Results 61 - 80 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28729 3' -62.4 NC_006146.1 + 169552 0.66 0.634084
Target:  5'- cGAGGGGCgaGCGgGGggcuUCCCCGGGGcCc -3'
miRNA:   3'- aCUUCCCGg-UGCgCC----GGGGGUCUCuG- -5'
28729 3' -62.4 NC_006146.1 + 52616 0.66 0.634084
Target:  5'- aGcuGGGCCAUcuCGuGCCCCCuGAGGa -3'
miRNA:   3'- aCuuCCCGGUGc-GC-CGGGGGuCUCUg -5'
28729 3' -62.4 NC_006146.1 + 155477 0.66 0.634084
Target:  5'- cGGAGGGCCuga-GGCCCaggggcgaGGGGACu -3'
miRNA:   3'- aCUUCCCGGugcgCCGGGgg------UCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 137036 0.66 0.634084
Target:  5'- gGAGGaGGCCGgGUgggGGCCUgggguuCCGGGGACc -3'
miRNA:   3'- aCUUC-CCGGUgCG---CCGGG------GGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 32020 0.66 0.634084
Target:  5'- aGAGGGGCCucgggacgagGCGCuGGCCcaggucaugaCCCGGGcguGGCg -3'
miRNA:   3'- aCUUCCCGG----------UGCG-CCGG----------GGGUCU---CUG- -5'
28729 3' -62.4 NC_006146.1 + 103648 0.66 0.634084
Target:  5'- gGAGGGGCC-CGCcuaucCCCCCAGccuccguGGCu -3'
miRNA:   3'- aCUUCCCGGuGCGcc---GGGGGUCu------CUG- -5'
28729 3' -62.4 NC_006146.1 + 128097 0.66 0.634084
Target:  5'- gGAGGGGCCGagGCaggggacaauGGCgUCCAGgAGGCg -3'
miRNA:   3'- aCUUCCCGGUg-CG----------CCGgGGGUC-UCUG- -5'
28729 3' -62.4 NC_006146.1 + 143165 0.66 0.634084
Target:  5'- cGGAGGGCCuga-GGCCCaggggcgaGGGGACu -3'
miRNA:   3'- aCUUCCCGGugcgCCGGGgg------UCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 146243 0.66 0.634084
Target:  5'- cGGAGGGCCuga-GGCCCaggggcgaGGGGACu -3'
miRNA:   3'- aCUUCCCGGugcgCCGGGgg------UCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 149321 0.66 0.634084
Target:  5'- cGGAGGGCCuga-GGCCCaggggcgaGGGGACu -3'
miRNA:   3'- aCUUCCCGGugcgCCGGGgg------UCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 152399 0.66 0.634084
Target:  5'- cGGAGGGCCuga-GGCCCaggggcgaGGGGACu -3'
miRNA:   3'- aCUUCCCGGugcgCCGGGgg------UCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 167687 0.66 0.634084
Target:  5'- cGAGGGGCgaGCGgGGggcuUCCCCGGGGcCc -3'
miRNA:   3'- aCUUCCCGg-UGCgCC----GGGGGUCUCuG- -5'
28729 3' -62.4 NC_006146.1 + 57249 0.66 0.633103
Target:  5'- ---cGGGCC-CGUGGucagcaaggccauCCCCCGGAGcACc -3'
miRNA:   3'- acuuCCCGGuGCGCC-------------GGGGGUCUC-UG- -5'
28729 3' -62.4 NC_006146.1 + 112290 0.66 0.624275
Target:  5'- gUGggGGGCUggGUugauGCCCCCGuAGAUg -3'
miRNA:   3'- -ACuuCCCGGugCGc---CGGGGGUcUCUG- -5'
28729 3' -62.4 NC_006146.1 + 156062 0.66 0.624275
Target:  5'- ----cGGCCuccCGCGGCCCCgGgcccGAGACc -3'
miRNA:   3'- acuucCCGGu--GCGCCGGGGgU----CUCUG- -5'
28729 3' -62.4 NC_006146.1 + 146856 0.66 0.624275
Target:  5'- cUGGcucGGGGCCGCGUcacCCCgCCAGGGGg -3'
miRNA:   3'- -ACU---UCCCGGUGCGcc-GGG-GGUCUCUg -5'
28729 3' -62.4 NC_006146.1 + 32979 0.66 0.624275
Target:  5'- cGcuGGGUCGCgGCuGCCCCCGGAa-- -3'
miRNA:   3'- aCuuCCCGGUG-CGcCGGGGGUCUcug -5'
28729 3' -62.4 NC_006146.1 + 10287 0.66 0.624275
Target:  5'- cGGAGcuggcauGCCAgGCGGCcgaCCUCGGGGGCa -3'
miRNA:   3'- aCUUCc------CGGUgCGCCG---GGGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 45808 0.66 0.623294
Target:  5'- gGAAGGccGCCGCcaCGGCCgCCUcgaagacGGAGACg -3'
miRNA:   3'- aCUUCC--CGGUGc-GCCGG-GGG-------UCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 74707 0.66 0.623294
Target:  5'- aGggGGGCuUACGCucagggccagaaaGGCCCUgGaGGGACc -3'
miRNA:   3'- aCuuCCCG-GUGCG-------------CCGGGGgU-CUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.