miRNA display CGI


Results 41 - 60 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28729 3' -62.4 NC_006146.1 + 19742 0.66 0.643893
Target:  5'- gGAcaGGGGCCucccaG-GGCCcuccaguccagaCCCAGAGACg -3'
miRNA:   3'- aCU--UCCCGGug---CgCCGG------------GGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 13586 0.66 0.643893
Target:  5'- gGAcaGGGGCCucccaG-GGCCcuccaguccagaCCCAGAGACg -3'
miRNA:   3'- aCU--UCCCGGug---CgCCGG------------GGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 28975 0.66 0.643893
Target:  5'- gGAcaGGGGCCucccaG-GGCCcuccaguccagaCCCAGAGACg -3'
miRNA:   3'- aCU--UCCCGGug---CgCCGG------------GGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 22820 0.66 0.643893
Target:  5'- gGAcaGGGGCCucccaG-GGCCcuccaguccagaCCCAGAGACg -3'
miRNA:   3'- aCU--UCCCGGug---CgCCGG------------GGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 70840 0.66 0.643893
Target:  5'- -cAAGGGCCAaGCGGgCCCgGuGAGGg -3'
miRNA:   3'- acUUCCCGGUgCGCCgGGGgU-CUCUg -5'
28729 3' -62.4 NC_006146.1 + 81771 0.66 0.643893
Target:  5'- aGAGcauGGCCGCcCGGUCUCCGGGGGu -3'
miRNA:   3'- aCUUc--CCGGUGcGCCGGGGGUCUCUg -5'
28729 3' -62.4 NC_006146.1 + 3155 0.66 0.643893
Target:  5'- gGGAGGGCgGCGacaaucgcCGcGCCCCCucAGGCc -3'
miRNA:   3'- aCUUCCCGgUGC--------GC-CGGGGGucUCUG- -5'
28729 3' -62.4 NC_006146.1 + 2223 0.66 0.643893
Target:  5'- gGGAGGGCgGCGacaaucgcCGcGCCCCCucAGGCc -3'
miRNA:   3'- aCUUCCCGgUGC--------GC-CGGGGGucUCUG- -5'
28729 3' -62.4 NC_006146.1 + 1291 0.66 0.643893
Target:  5'- gGGAGGGCgGCGacaaucgcCGcGCCCCCucAGGCc -3'
miRNA:   3'- aCUUCCCGgUGC--------GC-CGGGGGucUCUG- -5'
28729 3' -62.4 NC_006146.1 + 30209 0.66 0.643893
Target:  5'- -aGAGGGCCGCuGC-GCCCgCCGGGcuGGCc -3'
miRNA:   3'- acUUCCCGGUG-CGcCGGG-GGUCU--CUG- -5'
28729 3' -62.4 NC_006146.1 + 360 0.66 0.643893
Target:  5'- gGGAGGGCgGCGacaaucgcCGcGCCCCCucAGGCc -3'
miRNA:   3'- aCUUCCCGgUGC--------GC-CGGGGGucUCUG- -5'
28729 3' -62.4 NC_006146.1 + 155786 0.66 0.643893
Target:  5'- aGAAGaGCCGCuCGGUggCCCUGGGGGCc -3'
miRNA:   3'- aCUUCcCGGUGcGCCG--GGGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 59997 0.66 0.638008
Target:  5'- aUGGAGugcaaGGCCaACGCGGCcccguCCCCGccugcgcccgagcccGAGACg -3'
miRNA:   3'- -ACUUC-----CCGG-UGCGCCG-----GGGGU---------------CUCUG- -5'
28729 3' -62.4 NC_006146.1 + 117365 0.66 0.637027
Target:  5'- aGAAGccccucgguccucgcGGCCuucacacGCGCGGCCCgcagCCAGAGcCa -3'
miRNA:   3'- aCUUC---------------CCGG-------UGCGCCGGG----GGUCUCuG- -5'
28729 3' -62.4 NC_006146.1 + 166033 0.66 0.634084
Target:  5'- cGggGGuGCC-UGUGGCCCCCGc---- -3'
miRNA:   3'- aCuuCC-CGGuGCGCCGGGGGUcucug -5'
28729 3' -62.4 NC_006146.1 + 167687 0.66 0.634084
Target:  5'- cGAGGGGCgaGCGgGGggcuUCCCCGGGGcCc -3'
miRNA:   3'- aCUUCCCGg-UGCgCC----GGGGGUCUCuG- -5'
28729 3' -62.4 NC_006146.1 + 169552 0.66 0.634084
Target:  5'- cGAGGGGCgaGCGgGGggcuUCCCCGGGGcCc -3'
miRNA:   3'- aCUUCCCGg-UGCgCC----GGGGGUCUCuG- -5'
28729 3' -62.4 NC_006146.1 + 7447 0.66 0.634084
Target:  5'- aGAAGGGCagccUGCGaaacuucacGCCCCCcGAGAa -3'
miRNA:   3'- aCUUCCCGgu--GCGC---------CGGGGGuCUCUg -5'
28729 3' -62.4 NC_006146.1 + 168620 0.66 0.634084
Target:  5'- cGAGGGGCgaGCGgGGggcuUCCCCGGGGcCc -3'
miRNA:   3'- aCUUCCCGg-UGCgCC----GGGGGUCUCuG- -5'
28729 3' -62.4 NC_006146.1 + 52616 0.66 0.634084
Target:  5'- aGcuGGGCCAUcuCGuGCCCCCuGAGGa -3'
miRNA:   3'- aCuuCCCGGUGc-GC-CGGGGGuCUCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.