miRNA display CGI


Results 41 - 60 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28729 3' -62.4 NC_006146.1 + 2985 0.72 0.326545
Target:  5'- aGAAGGGucucuCCACGCGccgguGCCCCCGcGAGGg -3'
miRNA:   3'- aCUUCCC-----GGUGCGC-----CGGGGGU-CUCUg -5'
28729 3' -62.4 NC_006146.1 + 6424 0.72 0.326545
Target:  5'- uUGGcccAGGGCCAUGUGGgCCCUGGGGuCc -3'
miRNA:   3'- -ACU---UCCCGGUGCGCCgGGGGUCUCuG- -5'
28729 3' -62.4 NC_006146.1 + 46033 0.71 0.340973
Target:  5'- uUGGAaGGCgACGgGGCCCuCCAGGGgACg -3'
miRNA:   3'- -ACUUcCCGgUGCgCCGGG-GGUCUC-UG- -5'
28729 3' -62.4 NC_006146.1 + 37411 0.71 0.340973
Target:  5'- gGAGGGGCCGCG-GuGCaaguagCCCCGGuGACa -3'
miRNA:   3'- aCUUCCCGGUGCgC-CG------GGGGUCuCUG- -5'
28729 3' -62.4 NC_006146.1 + 40985 0.71 0.340973
Target:  5'- ---uGGuGCCGCGcCGGCgCCCCAGGGcGCa -3'
miRNA:   3'- acuuCC-CGGUGC-GCCG-GGGGUCUC-UG- -5'
28729 3' -62.4 NC_006146.1 + 126080 0.71 0.348358
Target:  5'- cGAGGGG-CGC-CGGCCCCCuacAGAGGu -3'
miRNA:   3'- aCUUCCCgGUGcGCCGGGGG---UCUCUg -5'
28729 3' -62.4 NC_006146.1 + 99015 0.71 0.353596
Target:  5'- aGGAGGGuCCGCGUgacggccguguagaGGCCCCCcaGGGCc -3'
miRNA:   3'- aCUUCCC-GGUGCG--------------CCGGGGGucUCUG- -5'
28729 3' -62.4 NC_006146.1 + 2052 0.71 0.355857
Target:  5'- aGAAGGGucuucuCCACGCGccgguGCCCCCGcGAGGg -3'
miRNA:   3'- aCUUCCC------GGUGCGC-----CGGGGGU-CUCUg -5'
28729 3' -62.4 NC_006146.1 + 1120 0.71 0.355857
Target:  5'- aGAAGGGucuucuCCACGCGccgguGCCCCCGcGAGGg -3'
miRNA:   3'- aCUUCCC------GGUGCGC-----CGGGGGU-CUCUg -5'
28729 3' -62.4 NC_006146.1 + 116644 0.71 0.355857
Target:  5'- cGGAGGacguuucccGCCugacCGgGGCCgCCCAGAGGCu -3'
miRNA:   3'- aCUUCC---------CGGu---GCgCCGG-GGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 79635 0.71 0.363469
Target:  5'- gGAcAGGGUCACaggccgGCGaGCCCCCcauGGGGACg -3'
miRNA:   3'- aCU-UCCCGGUG------CGC-CGGGGG---UCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 13449 0.71 0.371193
Target:  5'- cGGAGGGaccccggcagcCCGgGUGG-CCCCAGAGGCc -3'
miRNA:   3'- aCUUCCC-----------GGUgCGCCgGGGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 28839 0.71 0.371193
Target:  5'- cGGAGGGaccccggcagcCCGgGUGG-CCCCAGAGGCc -3'
miRNA:   3'- aCUUCCC-----------GGUgCGCCgGGGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 22683 0.71 0.371193
Target:  5'- cGGAGGGaccccggcagcCCGgGUGG-CCCCAGAGGCc -3'
miRNA:   3'- aCUUCCC-----------GGUgCGCCgGGGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 25761 0.71 0.371193
Target:  5'- cGGAGGGaccccggcagcCCGgGUGG-CCCCAGAGGCc -3'
miRNA:   3'- aCUUCCC-----------GGUgCGCCgGGGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 16527 0.71 0.371193
Target:  5'- cGGAGGGaccccggcagcCCGgGUGG-CCCCAGAGGCc -3'
miRNA:   3'- aCUUCCC-----------GGUgCGCCgGGGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 19605 0.71 0.371193
Target:  5'- cGGAGGGaccccggcagcCCGgGUGG-CCCCAGAGGCc -3'
miRNA:   3'- aCUUCCC-----------GGUgCGCCgGGGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 34073 0.7 0.386973
Target:  5'- gUGGcacGGGGCCGgG-GGUCCCgGGGGGCa -3'
miRNA:   3'- -ACU---UCCCGGUgCgCCGGGGgUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 54344 0.7 0.386973
Target:  5'- aUGAGGGG-CACGCGGacgUCCUGGAGAa -3'
miRNA:   3'- -ACUUCCCgGUGCGCCg--GGGGUCUCUg -5'
28729 3' -62.4 NC_006146.1 + 5078 0.7 0.386973
Target:  5'- uUGGAGGcGuCCACGCGGCC---AGGGACg -3'
miRNA:   3'- -ACUUCC-C-GGUGCGCCGGgggUCUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.