miRNA display CGI


Results 41 - 60 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28729 3' -62.4 NC_006146.1 + 15307 0.66 0.663477
Target:  5'- gGAGGGGCCGgaggccagcccCgGUGuGCCCCUGGcGGGCg -3'
miRNA:   3'- aCUUCCCGGU-----------G-CGC-CGGGGGUC-UCUG- -5'
28729 3' -62.4 NC_006146.1 + 15994 0.7 0.411456
Target:  5'- cGAAGGGCgGaCGCGGUCagCCCGggcGAGGCc -3'
miRNA:   3'- aCUUCCCGgU-GCGCCGG--GGGU---CUCUG- -5'
28729 3' -62.4 NC_006146.1 + 16527 0.71 0.371193
Target:  5'- cGGAGGGaccccggcagcCCGgGUGG-CCCCAGAGGCc -3'
miRNA:   3'- aCUUCCC-----------GGUgCGCCgGGGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 16664 0.66 0.643893
Target:  5'- gGAcaGGGGCCucccaG-GGCCcuccaguccagaCCCAGAGACg -3'
miRNA:   3'- aCU--UCCCGGug---CgCCGG------------GGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 18948 0.78 0.127202
Target:  5'- gGAAGGGCauguggugCGCcaGCGGCCCCUAGAGAg -3'
miRNA:   3'- aCUUCCCG--------GUG--CGCCGGGGGUCUCUg -5'
28729 3' -62.4 NC_006146.1 + 19605 0.71 0.371193
Target:  5'- cGGAGGGaccccggcagcCCGgGUGG-CCCCAGAGGCc -3'
miRNA:   3'- aCUUCCC-----------GGUgCGCCgGGGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 19742 0.66 0.643893
Target:  5'- gGAcaGGGGCCucccaG-GGCCcuccaguccagaCCCAGAGACg -3'
miRNA:   3'- aCU--UCCCGGug---CgCCGG------------GGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 20167 0.66 0.653693
Target:  5'- aGGAGaucccucGCCucuuUGCagagGGCCCCCGGGGGCg -3'
miRNA:   3'- aCUUCc------CGGu---GCG----CCGGGGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 22683 0.71 0.371193
Target:  5'- cGGAGGGaccccggcagcCCGgGUGG-CCCCAGAGGCc -3'
miRNA:   3'- aCUUCCC-----------GGUgCGCCgGGGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 22820 0.66 0.643893
Target:  5'- gGAcaGGGGCCucccaG-GGCCcuccaguccagaCCCAGAGACg -3'
miRNA:   3'- aCU--UCCCGGug---CgCCGG------------GGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 24045 0.74 0.238266
Target:  5'- gGcGGGGUgACGCGGCCCCgAGccAGGCc -3'
miRNA:   3'- aCuUCCCGgUGCGCCGGGGgUC--UCUG- -5'
28729 3' -62.4 NC_006146.1 + 24074 0.67 0.546533
Target:  5'- ---cGGGCUcuacgcugGCGCGGCCUcgCCuGGGACg -3'
miRNA:   3'- acuuCCCGG--------UGCGCCGGG--GGuCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 25761 0.71 0.371193
Target:  5'- cGGAGGGaccccggcagcCCGgGUGG-CCCCAGAGGCc -3'
miRNA:   3'- aCUUCCC-----------GGUgCGCCgGGGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 25898 0.66 0.643893
Target:  5'- gGAcaGGGGCCucccaG-GGCCcuccaguccagaCCCAGAGACg -3'
miRNA:   3'- aCU--UCCCGGug---CgCCGG------------GGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 27349 0.68 0.536997
Target:  5'- ---cGGGUgGCGCGGCaaggCCgGGGGGCg -3'
miRNA:   3'- acuuCCCGgUGCGCCGg---GGgUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 27392 0.68 0.499482
Target:  5'- --cGGGGCacagaCGCGUGGCaucaCCCCgAGAGACg -3'
miRNA:   3'- acuUCCCG-----GUGCGCCG----GGGG-UCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 28839 0.71 0.371193
Target:  5'- cGGAGGGaccccggcagcCCGgGUGG-CCCCAGAGGCc -3'
miRNA:   3'- aCUUCCC-----------GGUgCGCCgGGGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 28975 0.66 0.643893
Target:  5'- gGAcaGGGGCCucccaG-GGCCcuccaguccagaCCCAGAGACg -3'
miRNA:   3'- aCU--UCCCGGug---CgCCGG------------GGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 30209 0.66 0.643893
Target:  5'- -aGAGGGCCGCuGC-GCCCgCCGGGcuGGCc -3'
miRNA:   3'- acUUCCCGGUG-CGcCGGG-GGUCU--CUG- -5'
28729 3' -62.4 NC_006146.1 + 32020 0.66 0.634084
Target:  5'- aGAGGGGCCucgggacgagGCGCuGGCCcaggucaugaCCCGGGcguGGCg -3'
miRNA:   3'- aCUUCCCGG----------UGCG-CCGG----------GGGUCU---CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.