miRNA display CGI


Results 21 - 40 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28729 3' -62.4 NC_006146.1 + 3096 0.7 0.403189
Target:  5'- gGgcGGGCCACGCGcGCCCgCCAc---- -3'
miRNA:   3'- aCuuCCCGGUGCGC-CGGG-GGUcucug -5'
28729 3' -62.4 NC_006146.1 + 3155 0.66 0.643893
Target:  5'- gGGAGGGCgGCGacaaucgcCGcGCCCCCucAGGCc -3'
miRNA:   3'- aCUUCCCGgUGC--------GC-CGGGGGucUCUG- -5'
28729 3' -62.4 NC_006146.1 + 3274 0.67 0.55324
Target:  5'- cGccGGGCCcCGCGggaccccccccuccGCCCCC-GAGGCc -3'
miRNA:   3'- aCuuCCCGGuGCGC--------------CGGGGGuCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 3351 0.66 0.663477
Target:  5'- ---cGGGCCuccacACGUGGCCuCCCAGGn-- -3'
miRNA:   3'- acuuCCCGG-----UGCGCCGG-GGGUCUcug -5'
28729 3' -62.4 NC_006146.1 + 3377 0.72 0.319502
Target:  5'- aGAGGGGCCggggGCGCGGCCCggcgCCAGc--- -3'
miRNA:   3'- aCUUCCCGG----UGCGCCGGG----GGUCucug -5'
28729 3' -62.4 NC_006146.1 + 3694 0.76 0.170856
Target:  5'- gGggGaaGGCCGCGCGccGCCCCCcGGGACc -3'
miRNA:   3'- aCuuC--CCGGUGCGC--CGGGGGuCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 3734 0.74 0.238266
Target:  5'- -uGGGGGCCGCGUGGCCcuucagCCCGGGGu- -3'
miRNA:   3'- acUUCCCGGUGCGCCGG------GGGUCUCug -5'
28729 3' -62.4 NC_006146.1 + 3797 0.66 0.604678
Target:  5'- gGggGGGgCACGCGggggauggccacGCCCCCcucacuuuuuuGGAGcCg -3'
miRNA:   3'- aCuuCCCgGUGCGC------------CGGGGG-----------UCUCuG- -5'
28729 3' -62.4 NC_006146.1 + 5078 0.7 0.386973
Target:  5'- uUGGAGGcGuCCACGCGGCC---AGGGACg -3'
miRNA:   3'- -ACUUCC-C-GGUGCGCCGGgggUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 6424 0.72 0.326545
Target:  5'- uUGGcccAGGGCCAUGUGGgCCCUGGGGuCc -3'
miRNA:   3'- -ACU---UCCCGGUGCGCCgGGGGUCUCuG- -5'
28729 3' -62.4 NC_006146.1 + 7447 0.66 0.634084
Target:  5'- aGAAGGGCagccUGCGaaacuucacGCCCCCcGAGAa -3'
miRNA:   3'- aCUUCCCGgu--GCGC---------CGGGGGuCUCUg -5'
28729 3' -62.4 NC_006146.1 + 10287 0.66 0.624275
Target:  5'- cGGAGcuggcauGCCAgGCGGCcgaCCUCGGGGGCa -3'
miRNA:   3'- aCUUCc------CGGUgCGCCG---GGGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 10751 0.66 0.618391
Target:  5'- --cGGGGCCAUGCGGCuacaucuacuucuacCCCCu--GGCc -3'
miRNA:   3'- acuUCCCGGUGCGCCG---------------GGGGucuCUG- -5'
28729 3' -62.4 NC_006146.1 + 11546 0.66 0.663477
Target:  5'- ----uGGCCAaucaGCGGUCCCUaagGGGGGCu -3'
miRNA:   3'- acuucCCGGUg---CGCCGGGGG---UCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 12183 0.66 0.61447
Target:  5'- -cGGGGGCCuCG-GGCUCCUAcaacGAGACg -3'
miRNA:   3'- acUUCCCGGuGCgCCGGGGGU----CUCUG- -5'
28729 3' -62.4 NC_006146.1 + 12776 0.67 0.556122
Target:  5'- cUGccGGaCCuggACGCGGCCCUgCAGGGGCg -3'
miRNA:   3'- -ACuuCCcGG---UGCGCCGGGG-GUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 13449 0.71 0.371193
Target:  5'- cGGAGGGaccccggcagcCCGgGUGG-CCCCAGAGGCc -3'
miRNA:   3'- aCUUCCC-----------GGUgCGCCgGGGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 13586 0.66 0.643893
Target:  5'- gGAcaGGGGCCucccaG-GGCCcuccaguccagaCCCAGAGACg -3'
miRNA:   3'- aCU--UCCCGGug---CgCCGG------------GGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 14842 0.68 0.527519
Target:  5'- ---cGGGCC-CGgGGCCgCgGGAGGCc -3'
miRNA:   3'- acuuCCCGGuGCgCCGGgGgUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 15031 0.67 0.575439
Target:  5'- gGAGGGgcGCCugGCcagGGCCCgCCgggccugcgaGGAGGCa -3'
miRNA:   3'- aCUUCC--CGGugCG---CCGGG-GG----------UCUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.