miRNA display CGI


Results 21 - 40 of 317 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28729 3' -62.4 NC_006146.1 + 170674 0.75 0.211943
Target:  5'- gGggGaGGCCAgG-GGCgCCCCGGGGACc -3'
miRNA:   3'- aCuuC-CCGGUgCgCCG-GGGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 56870 0.75 0.211943
Target:  5'- gGcuGGGgCugGCGGCCCCCguguucGGGGACu -3'
miRNA:   3'- aCuuCCCgGugCGCCGGGGG------UCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 52838 0.74 0.238266
Target:  5'- cGGAGGGCCGagccgcCGCcGCCCCCgcccGGGGGCu -3'
miRNA:   3'- aCUUCCCGGU------GCGcCGGGGG----UCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 3734 0.74 0.238266
Target:  5'- -uGGGGGCCGCGUGGCCcuucagCCCGGGGu- -3'
miRNA:   3'- acUUCCCGGUGCGCCGG------GGGUCUCug -5'
28729 3' -62.4 NC_006146.1 + 24045 0.74 0.238266
Target:  5'- gGcGGGGUgACGCGGCCCCgAGccAGGCc -3'
miRNA:   3'- aCuUCCCGgUGCGCCGGGGgUC--UCUG- -5'
28729 3' -62.4 NC_006146.1 + 155560 0.74 0.249539
Target:  5'- gGAGccGGGCuCGCGCGgggcGCCCgCCAGGGGCa -3'
miRNA:   3'- aCUU--CCCG-GUGCGC----CGGG-GGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 109418 0.73 0.255339
Target:  5'- cGGucAGGGCC-CGUuuGGCCCCCucaaaaAGAGACa -3'
miRNA:   3'- aCU--UCCCGGuGCG--CCGGGGG------UCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 92500 0.73 0.255339
Target:  5'- aGAAGGGCC-CaGCGGCUCCUaucAGAGgACg -3'
miRNA:   3'- aCUUCCCGGuG-CGCCGGGGG---UCUC-UG- -5'
28729 3' -62.4 NC_006146.1 + 67591 0.73 0.26727
Target:  5'- uUGggGGGCCcgugGCGUuuGGCCUCCGGugcgaGGACa -3'
miRNA:   3'- -ACuuCCCGG----UGCG--CCGGGGGUC-----UCUG- -5'
28729 3' -62.4 NC_006146.1 + 33483 0.73 0.26727
Target:  5'- gGAAGGGagggGCGUGGUCCCCGG-GACc -3'
miRNA:   3'- aCUUCCCgg--UGCGCCGGGGGUCuCUG- -5'
28729 3' -62.4 NC_006146.1 + 167640 0.73 0.273402
Target:  5'- cGcGGGGCCcgGCGCGuGCCgggggCCCGGGGGCg -3'
miRNA:   3'- aCuUCCCGG--UGCGC-CGG-----GGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 168572 0.72 0.299061
Target:  5'- cGcGGGGCCcgGCGCGuGCCgggggaCCCGGGGGCg -3'
miRNA:   3'- aCuUCCCGG--UGCGC-CGG------GGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 170435 0.72 0.299061
Target:  5'- cGcGGGGCCcgGCGCGuGCCgggggaCCCGGGGGCg -3'
miRNA:   3'- aCuUCCCGG--UGCGC-CGG------GGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 169504 0.72 0.299061
Target:  5'- cGcGGGGCCcgGCGCGuGCCgggggaCCCGGGGGCg -3'
miRNA:   3'- aCuUCCCGG--UGCGC-CGG------GGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 44944 0.72 0.312574
Target:  5'- gUGGccAGGGgCGCGgggaGGCCCCgGGGGACu -3'
miRNA:   3'- -ACU--UCCCgGUGCg---CCGGGGgUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 121349 0.72 0.316717
Target:  5'- aUGcuGGGCCugGCcggcguggccuccGCCCCCAGAGGa -3'
miRNA:   3'- -ACuuCCCGGugCGc------------CGGGGGUCUCUg -5'
28729 3' -62.4 NC_006146.1 + 1513 0.72 0.319502
Target:  5'- aGAGGGGCCggggGCGCGGCCCggcgCCAGc--- -3'
miRNA:   3'- aCUUCCCGG----UGCGCCGGG----GGUCucug -5'
28729 3' -62.4 NC_006146.1 + 3377 0.72 0.319502
Target:  5'- aGAGGGGCCggggGCGCGGCCCggcgCCAGc--- -3'
miRNA:   3'- aCUUCCCGG----UGCGCCGGG----GGUCucug -5'
28729 3' -62.4 NC_006146.1 + 582 0.72 0.319502
Target:  5'- aGAGGGGCCggggGCGCGGCCCggcgCCAGc--- -3'
miRNA:   3'- aCUUCCCGG----UGCGCCGGG----GGUCucug -5'
28729 3' -62.4 NC_006146.1 + 2445 0.72 0.319502
Target:  5'- aGAGGGGCCggggGCGCGGCCCggcgCCAGc--- -3'
miRNA:   3'- aCUUCCCGG----UGCGCCGGG----GGUCucug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.