miRNA display CGI


Results 21 - 40 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28729 3' -62.4 NC_006146.1 + 79635 0.71 0.363469
Target:  5'- gGAcAGGGUCACaggccgGCGaGCCCCCcauGGGGACg -3'
miRNA:   3'- aCU-UCCCGGUG------CGC-CGGGGG---UCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 46033 0.71 0.340973
Target:  5'- uUGGAaGGCgACGgGGCCCuCCAGGGgACg -3'
miRNA:   3'- -ACUUcCCGgUGCgCCGGG-GGUCUC-UG- -5'
28729 3' -62.4 NC_006146.1 + 155560 0.74 0.249539
Target:  5'- gGAGccGGGCuCGCGCGgggcGCCCgCCAGGGGCa -3'
miRNA:   3'- aCUU--CCCG-GUGCGC----CGGG-GGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 169389 0.75 0.202133
Target:  5'- cGccGGGCCGCGCccccGGCCCCUcuccugGGAGGCc -3'
miRNA:   3'- aCuuCCCGGUGCG----CCGGGGG------UCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 56124 0.7 0.395027
Target:  5'- cGAAGguGGCCGCG-GGCCCC--GAGACc -3'
miRNA:   3'- aCUUC--CCGGUGCgCCGGGGguCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 25761 0.71 0.371193
Target:  5'- cGGAGGGaccccggcagcCCGgGUGG-CCCCAGAGGCc -3'
miRNA:   3'- aCUUCCC-----------GGUgCGCCgGGGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 170435 0.72 0.299061
Target:  5'- cGcGGGGCCcgGCGCGuGCCgggggaCCCGGGGGCg -3'
miRNA:   3'- aCuUCCCGG--UGCGC-CGG------GGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 168457 0.75 0.202133
Target:  5'- cGccGGGCCGCGCccccGGCCCCUcuccugGGAGGCc -3'
miRNA:   3'- aCuuCCCGGUGCG----CCGGGGG------UCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 22683 0.71 0.371193
Target:  5'- cGGAGGGaccccggcagcCCGgGUGG-CCCCAGAGGCc -3'
miRNA:   3'- aCUUCCC-----------GGUgCGCCgGGGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 167525 0.75 0.202133
Target:  5'- cGccGGGCCGCGCccccGGCCCCUcuccugGGAGGCc -3'
miRNA:   3'- aCuuCCCGGUGCG----CCGGGGG------UCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 44944 0.72 0.312574
Target:  5'- gUGGccAGGGgCGCGgggaGGCCCCgGGGGACu -3'
miRNA:   3'- -ACU--UCCCgGUGCg---CCGGGGgUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 13449 0.71 0.371193
Target:  5'- cGGAGGGaccccggcagcCCGgGUGG-CCCCAGAGGCc -3'
miRNA:   3'- aCUUCCC-----------GGUgCGCCgGGGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 167640 0.73 0.273402
Target:  5'- cGcGGGGCCcgGCGCGuGCCgggggCCCGGGGGCg -3'
miRNA:   3'- aCuUCCCGG--UGCGC-CGG-----GGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 92500 0.73 0.255339
Target:  5'- aGAAGGGCC-CaGCGGCUCCUaucAGAGgACg -3'
miRNA:   3'- aCUUCCCGGuG-CGCCGGGGG---UCUC-UG- -5'
28729 3' -62.4 NC_006146.1 + 98329 0.75 0.211943
Target:  5'- cUGGcacGGGGCCggGCGCGGCCCgucccgguCCAgGAGACa -3'
miRNA:   3'- -ACU---UCCCGG--UGCGCCGGG--------GGU-CUCUG- -5'
28729 3' -62.4 NC_006146.1 + 170320 0.75 0.202133
Target:  5'- cGccGGGCCGCGCccccGGCCCCUcuccugGGAGGCc -3'
miRNA:   3'- aCuuCCCGGUGCG----CCGGGGG------UCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 167878 0.7 0.428302
Target:  5'- cGggGGaGCCcCGgGGCggCCCGGGGACc -3'
miRNA:   3'- aCuuCC-CGGuGCgCCGg-GGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 50110 0.7 0.403189
Target:  5'- ----cGGCCACGCGGaccggcgaccuCCgCCAGGGACa -3'
miRNA:   3'- acuucCCGGUGCGCC-----------GGgGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 56812 0.7 0.386973
Target:  5'- cUGgcGGGCgGgGCuucuGGCCCCC-GAGGCg -3'
miRNA:   3'- -ACuuCCCGgUgCG----CCGGGGGuCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 28839 0.71 0.371193
Target:  5'- cGGAGGGaccccggcagcCCGgGUGG-CCCCAGAGGCc -3'
miRNA:   3'- aCUUCCC-----------GGUgCGCCgGGGGUCUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.