Results 41 - 60 of 317 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28729 | 3' | -62.4 | NC_006146.1 | + | 51844 | 0.7 | 0.395027 |
Target: 5'- aGggGGGCU-CGgGGCCuggcccgagCCCGGGGAUg -3' miRNA: 3'- aCuuCCCGGuGCgCCGG---------GGGUCUCUG- -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 170435 | 0.72 | 0.299061 |
Target: 5'- cGcGGGGCCcgGCGCGuGCCgggggaCCCGGGGGCg -3' miRNA: 3'- aCuUCCCGG--UGCGC-CGG------GGGUCUCUG- -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 168457 | 0.75 | 0.202133 |
Target: 5'- cGccGGGCCGCGCccccGGCCCCUcuccugGGAGGCc -3' miRNA: 3'- aCuuCCCGGUGCG----CCGGGGG------UCUCUG- -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 49411 | 0.7 | 0.395027 |
Target: 5'- gGuGGGGUucUugGCGGCCCCCAcgauGGACc -3' miRNA: 3'- aCuUCCCG--GugCGCCGGGGGUc---UCUG- -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 167525 | 0.75 | 0.202133 |
Target: 5'- cGccGGGCCGCGCccccGGCCCCUcuccugGGAGGCc -3' miRNA: 3'- aCuuCCCGGUGCG----CCGGGGG------UCUCUG- -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 167807 | 0.68 | 0.527519 |
Target: 5'- gUGgcGGGCgCGCGUGGCccgcCCCCGGgucuucccGGGCu -3' miRNA: 3'- -ACuuCCCG-GUGCGCCG----GGGGUC--------UCUG- -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 170320 | 0.75 | 0.202133 |
Target: 5'- cGccGGGCCGCGCccccGGCCCCUcuccugGGAGGCc -3' miRNA: 3'- aCuuCCCGGUGCG----CCGGGGG------UCUCUG- -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 114254 | 0.68 | 0.499482 |
Target: 5'- gGGAGGGCCAgcucguaGUGGUgCCCCAGAu-- -3' miRNA: 3'- aCUUCCCGGUg------CGCCG-GGGGUCUcug -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 130732 | 0.69 | 0.481163 |
Target: 5'- cGAGGaGGCgGCG-GGCucuuCCCCGGAGAa -3' miRNA: 3'- aCUUC-CCGgUGCgCCG----GGGGUCUCUg -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 52910 | 0.69 | 0.445548 |
Target: 5'- ---uGGuCUGCGUGGcCCCCCGGGGGCg -3' miRNA: 3'- acuuCCcGGUGCGCC-GGGGGUCUCUG- -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 128199 | 0.7 | 0.428302 |
Target: 5'- aGggGGGCgC-CGCGGCgCCgGGccAGACg -3' miRNA: 3'- aCuuCCCG-GuGCGCCGgGGgUC--UCUG- -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 167878 | 0.7 | 0.428302 |
Target: 5'- cGggGGaGCCcCGgGGCggCCCGGGGACc -3' miRNA: 3'- aCuuCC-CGGuGCgCCGg-GGGUCUCUG- -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 50110 | 0.7 | 0.403189 |
Target: 5'- ----cGGCCACGCGGaccggcgaccuCCgCCAGGGACa -3' miRNA: 3'- acuucCCGGUGCGCC-----------GGgGGUCUCUG- -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 5078 | 0.7 | 0.386973 |
Target: 5'- uUGGAGGcGuCCACGCGGCC---AGGGACg -3' miRNA: 3'- -ACUUCC-C-GGUGCGCCGGgggUCUCUG- -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 22683 | 0.71 | 0.371193 |
Target: 5'- cGGAGGGaccccggcagcCCGgGUGG-CCCCAGAGGCc -3' miRNA: 3'- aCUUCCC-----------GGUgCGCCgGGGGUCUCUG- -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 79635 | 0.71 | 0.363469 |
Target: 5'- gGAcAGGGUCACaggccgGCGaGCCCCCcauGGGGACg -3' miRNA: 3'- aCU-UCCCGGUG------CGC-CGGGGG---UCUCUG- -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 46033 | 0.71 | 0.340973 |
Target: 5'- uUGGAaGGCgACGgGGCCCuCCAGGGgACg -3' miRNA: 3'- -ACUUcCCGgUGCgCCGGG-GGUCUC-UG- -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 167640 | 0.73 | 0.273402 |
Target: 5'- cGcGGGGCCcgGCGCGuGCCgggggCCCGGGGGCg -3' miRNA: 3'- aCuUCCCGG--UGCGC-CGG-----GGGUCUCUG- -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 92500 | 0.73 | 0.255339 |
Target: 5'- aGAAGGGCC-CaGCGGCUCCUaucAGAGgACg -3' miRNA: 3'- aCUUCCCGGuG-CGCCGGGGG---UCUC-UG- -5' |
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28729 | 3' | -62.4 | NC_006146.1 | + | 98329 | 0.75 | 0.211943 |
Target: 5'- cUGGcacGGGGCCggGCGCGGCCCgucccgguCCAgGAGACa -3' miRNA: 3'- -ACU---UCCCGG--UGCGCCGGG--------GGU-CUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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