miRNA display CGI


Results 21 - 40 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28729 3' -62.4 NC_006146.1 + 168457 0.75 0.202133
Target:  5'- cGccGGGCCGCGCccccGGCCCCUcuccugGGAGGCc -3'
miRNA:   3'- aCuuCCCGGUGCG----CCGGGGG------UCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 168347 0.67 0.556122
Target:  5'- cUGGcgGGGGCCAgCGCgGGgUCCCGG-GGCg -3'
miRNA:   3'- -ACU--UCCCGGU-GCG-CCgGGGGUCuCUG- -5'
28729 3' -62.4 NC_006146.1 + 168233 0.67 0.594904
Target:  5'- gGAGGGGCCG-GC-GCCUgCAGGGGg -3'
miRNA:   3'- aCUUCCCGGUgCGcCGGGgGUCUCUg -5'
28729 3' -62.4 NC_006146.1 + 168197 0.67 0.565759
Target:  5'- gGGAGGGCC-CGgGGCCgCgCguGGGGAUg -3'
miRNA:   3'- aCUUCCCGGuGCgCCGGgG-G--UCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 168115 0.68 0.527519
Target:  5'- gGAGGccGGCgCGCGCccggGGUCCCgGGGGGCg -3'
miRNA:   3'- aCUUC--CCG-GUGCG----CCGGGGgUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 167878 0.7 0.428302
Target:  5'- cGggGGaGCCcCGgGGCggCCCGGGGACc -3'
miRNA:   3'- aCuuCC-CGGuGCgCCGg-GGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 167807 0.68 0.527519
Target:  5'- gUGgcGGGCgCGCGUGGCccgcCCCCGGgucuucccGGGCu -3'
miRNA:   3'- -ACuuCCCG-GUGCGCCG----GGGGUC--------UCUG- -5'
28729 3' -62.4 NC_006146.1 + 167687 0.66 0.634084
Target:  5'- cGAGGGGCgaGCGgGGggcuUCCCCGGGGcCc -3'
miRNA:   3'- aCUUCCCGg-UGCgCC----GGGGGUCUCuG- -5'
28729 3' -62.4 NC_006146.1 + 167640 0.73 0.273402
Target:  5'- cGcGGGGCCcgGCGCGuGCCgggggCCCGGGGGCg -3'
miRNA:   3'- aCuUCCCGG--UGCGC-CGG-----GGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 167525 0.75 0.202133
Target:  5'- cGccGGGCCGCGCccccGGCCCCUcuccugGGAGGCc -3'
miRNA:   3'- aCuuCCCGGUGCG----CCGGGGG------UCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 167415 0.67 0.556122
Target:  5'- cUGGcgGGGGCCAgCGCgGGgUCCCGG-GGCg -3'
miRNA:   3'- -ACU--UCCCGGU-GCG-CCgGGGGUCuCUG- -5'
28729 3' -62.4 NC_006146.1 + 167301 0.67 0.594904
Target:  5'- gGAGGGGCCG-GC-GCCUgCAGGGGg -3'
miRNA:   3'- aCUUCCCGGUgCGcCGGGgGUCUCUg -5'
28729 3' -62.4 NC_006146.1 + 167265 0.67 0.565759
Target:  5'- gGGAGGGCC-CGgGGCCgCgCguGGGGAUg -3'
miRNA:   3'- aCUUCCCGGuGCgCCGGgG-G--UCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 167183 0.68 0.527519
Target:  5'- gGAGGccGGCgCGCGCccggGGUCCCgGGGGGCg -3'
miRNA:   3'- aCUUC--CCG-GUGCG----CCGGGGgUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 167172 1.08 0.001006
Target:  5'- cUGAAGGGCCACGCGGCCCCCAGAGACc -3'
miRNA:   3'- -ACUUCCCGGUGCGCCGGGGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 167082 0.66 0.663477
Target:  5'- cGggGGuGCCcCGCcuGGCCugaCCCAGAccuGACu -3'
miRNA:   3'- aCuuCC-CGGuGCG--CCGG---GGGUCU---CUG- -5'
28729 3' -62.4 NC_006146.1 + 166033 0.66 0.634084
Target:  5'- cGggGGuGCC-UGUGGCCCCCGc---- -3'
miRNA:   3'- aCuuCC-CGGuGCGCCGGGGGUcucug -5'
28729 3' -62.4 NC_006146.1 + 165932 0.67 0.546533
Target:  5'- gUGAAGGccGCCAggaggcucuCGUGGCCCCUGGuccccgGGGCa -3'
miRNA:   3'- -ACUUCC--CGGU---------GCGCCGGGGGUC------UCUG- -5'
28729 3' -62.4 NC_006146.1 + 163604 0.7 0.419828
Target:  5'- uUGAGGGGUCuugugGCGGUgCUUAGGGACa -3'
miRNA:   3'- -ACUUCCCGGug---CGCCGgGGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 162586 0.67 0.555161
Target:  5'- cGGAGGGUCGgG-GGCCCUaacagcaCAGAGAg -3'
miRNA:   3'- aCUUCCCGGUgCgCCGGGG-------GUCUCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.