miRNA display CGI


Results 1 - 20 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28729 3' -62.4 NC_006146.1 + 170674 0.75 0.211943
Target:  5'- gGggGaGGCCAgG-GGCgCCCCGGGGACc -3'
miRNA:   3'- aCuuC-CCGGUgCgCCG-GGGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 170494 0.67 0.594904
Target:  5'- cGggGGGCUucccCGGaCCCCCAGcgcgcggcGGGCg -3'
miRNA:   3'- aCuuCCCGGugc-GCC-GGGGGUC--------UCUG- -5'
28729 3' -62.4 NC_006146.1 + 170435 0.72 0.299061
Target:  5'- cGcGGGGCCcgGCGCGuGCCgggggaCCCGGGGGCg -3'
miRNA:   3'- aCuUCCCGG--UGCGC-CGG------GGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 170320 0.75 0.202133
Target:  5'- cGccGGGCCGCGCccccGGCCCCUcuccugGGAGGCc -3'
miRNA:   3'- aCuuCCCGGUGCG----CCGGGGG------UCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 170210 0.67 0.556122
Target:  5'- cUGGcgGGGGCCAgCGCgGGgUCCCGG-GGCg -3'
miRNA:   3'- -ACU--UCCCGGU-GCG-CCgGGGGUCuCUG- -5'
28729 3' -62.4 NC_006146.1 + 170061 0.67 0.565759
Target:  5'- gGGAGGGCC-CGgGGCCgCgCguGGGGAUg -3'
miRNA:   3'- aCUUCCCGGuGCgCCGGgG-G--UCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 169979 0.68 0.527519
Target:  5'- gGAGGccGGCgCGCGCccggGGUCCCgGGGGGCg -3'
miRNA:   3'- aCUUC--CCG-GUGCG----CCGGGGgUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 169742 0.7 0.428302
Target:  5'- cGggGGaGCCcCGgGGCggCCCGGGGACc -3'
miRNA:   3'- aCuuCC-CGGuGCgCCGg-GGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 169671 0.68 0.527519
Target:  5'- gUGgcGGGCgCGCGUGGCccgcCCCCGGgucuucccGGGCu -3'
miRNA:   3'- -ACuuCCCG-GUGCGCCG----GGGGUC--------UCUG- -5'
28729 3' -62.4 NC_006146.1 + 169552 0.66 0.634084
Target:  5'- cGAGGGGCgaGCGgGGggcuUCCCCGGGGcCc -3'
miRNA:   3'- aCUUCCCGg-UGCgCC----GGGGGUCUCuG- -5'
28729 3' -62.4 NC_006146.1 + 169504 0.72 0.299061
Target:  5'- cGcGGGGCCcgGCGCGuGCCgggggaCCCGGGGGCg -3'
miRNA:   3'- aCuUCCCGG--UGCGC-CGG------GGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 169389 0.75 0.202133
Target:  5'- cGccGGGCCGCGCccccGGCCCCUcuccugGGAGGCc -3'
miRNA:   3'- aCuuCCCGGUGCG----CCGGGGG------UCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 169279 0.67 0.556122
Target:  5'- cUGGcgGGGGCCAgCGCgGGgUCCCGG-GGCg -3'
miRNA:   3'- -ACU--UCCCGGU-GCG-CCgGGGGUCuCUG- -5'
28729 3' -62.4 NC_006146.1 + 169165 0.67 0.594904
Target:  5'- gGAGGGGCCG-GC-GCCUgCAGGGGg -3'
miRNA:   3'- aCUUCCCGGUgCGcCGGGgGUCUCUg -5'
28729 3' -62.4 NC_006146.1 + 169129 0.67 0.565759
Target:  5'- gGGAGGGCC-CGgGGCCgCgCguGGGGAUg -3'
miRNA:   3'- aCUUCCCGGuGCgCCGGgG-G--UCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 169047 0.68 0.527519
Target:  5'- gGAGGccGGCgCGCGCccggGGUCCCgGGGGGCg -3'
miRNA:   3'- aCUUC--CCG-GUGCG----CCGGGGgUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 168810 0.7 0.428302
Target:  5'- cGggGGaGCCcCGgGGCggCCCGGGGACc -3'
miRNA:   3'- aCuuCC-CGGuGCgCCGg-GGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 168739 0.68 0.527519
Target:  5'- gUGgcGGGCgCGCGUGGCccgcCCCCGGgucuucccGGGCu -3'
miRNA:   3'- -ACuuCCCG-GUGCGCCG----GGGGUC--------UCUG- -5'
28729 3' -62.4 NC_006146.1 + 168620 0.66 0.634084
Target:  5'- cGAGGGGCgaGCGgGGggcuUCCCCGGGGcCc -3'
miRNA:   3'- aCUUCCCGg-UGCgCC----GGGGGUCUCuG- -5'
28729 3' -62.4 NC_006146.1 + 168572 0.72 0.299061
Target:  5'- cGcGGGGCCcgGCGCGuGCCgggggaCCCGGGGGCg -3'
miRNA:   3'- aCuUCCCGG--UGCGC-CGG------GGGUCUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.