miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28730 3' -59.6 NC_006146.1 + 136758 0.68 0.649912
Target:  5'- -aGCUCGGGGCC--GGGGGCCggGUg -3'
miRNA:   3'- caUGGGCUCUGGaaCCCCCGGagCAg -5'
28730 3' -59.6 NC_006146.1 + 135458 0.68 0.649912
Target:  5'- -aGCUCGGGGCC--GGGGGCCggGUg -3'
miRNA:   3'- caUGGGCUCUGGaaCCCCCGGagCAg -5'
28730 3' -59.6 NC_006146.1 + 167654 0.69 0.6102
Target:  5'- cGUGCCgGGGGCCc-GGGGGCg-UGUCc -3'
miRNA:   3'- -CAUGGgCUCUGGaaCCCCCGgaGCAG- -5'
28730 3' -59.6 NC_006146.1 + 136666 0.68 0.649912
Target:  5'- -aGCUCGGGGCC--GGGGGCCggGUg -3'
miRNA:   3'- caUGGGCUCUGGaaCCCCCGGagCAg -5'
28730 3' -59.6 NC_006146.1 + 170200 0.69 0.600294
Target:  5'- -gGgCCGGGGCCUggcGGGGGCCagCG-Cg -3'
miRNA:   3'- caUgGGCUCUGGAa--CCCCCGGa-GCaG- -5'
28730 3' -59.6 NC_006146.1 + 22182 0.68 0.669717
Target:  5'- -cGCCCGGuGGCCUUGGGGuaGCuCUgggaGUCa -3'
miRNA:   3'- caUGGGCU-CUGGAACCCC--CG-GAg---CAG- -5'
28730 3' -59.6 NC_006146.1 + 31509 0.69 0.620122
Target:  5'- --cCCCGGcGCCgUGGGGGCCUUcUCc -3'
miRNA:   3'- cauGGGCUcUGGaACCCCCGGAGcAG- -5'
28730 3' -59.6 NC_006146.1 + 19104 0.68 0.669717
Target:  5'- -cGCCCGGuGGCCUUGGGGuaGCuCUgggaGUCa -3'
miRNA:   3'- caUGGGCU-CUGGAACCCC--CG-GAg---CAG- -5'
28730 3' -59.6 NC_006146.1 + 16026 0.68 0.669717
Target:  5'- -cGCCCGGuGGCCUUGGGGuaGCuCUgggaGUCa -3'
miRNA:   3'- caUGGGCU-CUGGAACCCC--CG-GAg---CAG- -5'
28730 3' -59.6 NC_006146.1 + 137316 0.68 0.649912
Target:  5'- -aGCUCGGGGCC--GGGGGCCggGUg -3'
miRNA:   3'- caUGGGCUCUGGaaCCCCCGGagCAg -5'
28730 3' -59.6 NC_006146.1 + 137223 0.68 0.649912
Target:  5'- -aGCUCGGGGCC--GGGGGCCggGUg -3'
miRNA:   3'- caUGGGCUCUGGaaCCCCCGGagCAg -5'
28730 3' -59.6 NC_006146.1 + 137037 0.68 0.649912
Target:  5'- -aGCUCGGGGCC--GGGGGCCggGUg -3'
miRNA:   3'- caUGGGCUCUGGaaCCCCCGGagCAg -5'
28730 3' -59.6 NC_006146.1 + 136944 0.68 0.649912
Target:  5'- -aGCUCGGGGCC--GGGGGCCggGUg -3'
miRNA:   3'- caUGGGCUCUGGaaCCCCCGGagCAg -5'
28730 3' -59.6 NC_006146.1 + 136573 0.68 0.649912
Target:  5'- -aGCUCGGGGCC--GGGGGCCggGUg -3'
miRNA:   3'- caUGGGCUCUGGaaCCCCCGGagCAg -5'
28730 3' -59.6 NC_006146.1 + 136294 0.68 0.649912
Target:  5'- -aGCUCGGGGCC--GGGGGCCggGUg -3'
miRNA:   3'- caUGGGCUCUGGaaCCCCCGGagCAg -5'
28730 3' -59.6 NC_006146.1 + 135922 0.68 0.649912
Target:  5'- -aGCUCGGGGCC--GGGGGCCggGUg -3'
miRNA:   3'- caUGGGCUCUGGaaCCCCCGGagCAg -5'
28730 3' -59.6 NC_006146.1 + 135644 0.68 0.649912
Target:  5'- -aGCUCGGGGCC--GGGGGCCggGUg -3'
miRNA:   3'- caUGGGCUCUGGaaCCCCCGGagCAg -5'
28730 3' -59.6 NC_006146.1 + 135179 0.68 0.649912
Target:  5'- -aGCUCGGGGCC--GGGGGCCggGUg -3'
miRNA:   3'- caUGGGCUCUGGaaCCCCCGGagCAg -5'
28730 3' -59.6 NC_006146.1 + 170066 0.68 0.639986
Target:  5'- -gGCCCGGGGCCgcgcgUGGGgauGGCCggCGg- -3'
miRNA:   3'- caUGGGCUCUGGa----ACCC---CCGGa-GCag -5'
28730 3' -59.6 NC_006146.1 + 43229 0.68 0.639986
Target:  5'- cGUGCagCG-GACCuUUGGGGuGCCUCGg- -3'
miRNA:   3'- -CAUGg-GCuCUGG-AACCCC-CGGAGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.