Results 21 - 40 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28730 | 3' | -59.6 | NC_006146.1 | + | 12949 | 0.69 | 0.630053 |
Target: 5'- -cGCCCGGuGGCCUUGGGGuaGCuCUggaGUCa -3' miRNA: 3'- caUGGGCU-CUGGAACCCC--CG-GAg--CAG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 162396 | 0.69 | 0.6102 |
Target: 5'- -cGCCCGGGACCccGGuGGGCCagGa- -3' miRNA: 3'- caUGGGCUCUGGaaCC-CCCGGagCag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 155794 | 0.7 | 0.570732 |
Target: 5'- -cGCUCGGuGGCCcUGGGGGCCaccgaGUCa -3' miRNA: 3'- caUGGGCU-CUGGaACCCCCGGag---CAG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 170390 | 0.73 | 0.397277 |
Target: 5'- -aGgCCG-GGCCUccccUGGGGGCCUCGg- -3' miRNA: 3'- caUgGGCuCUGGA----ACCCCCGGAGCag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 135551 | 0.68 | 0.649912 |
Target: 5'- -aGCUCGGGGCC--GGGGGCCggGUg -3' miRNA: 3'- caUGGGCUCUGGaaCCCCCGGagCAg -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 170066 | 0.68 | 0.639986 |
Target: 5'- -gGCCCGGGGCCgcgcgUGGGgauGGCCggCGg- -3' miRNA: 3'- caUGGGCUCUGGa----ACCC---CCGGa-GCag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 170200 | 0.69 | 0.600294 |
Target: 5'- -gGgCCGGGGCCUggcGGGGGCCagCG-Cg -3' miRNA: 3'- caUgGGCUCUGGAa--CCCCCGGa-GCaG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 169459 | 0.73 | 0.397277 |
Target: 5'- -aGgCCG-GGCCUccccUGGGGGCCUCGg- -3' miRNA: 3'- caUgGGCuCUGGA----ACCCCCGGAGCag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 169134 | 0.68 | 0.639986 |
Target: 5'- -gGCCCGGGGCCgcgcgUGGGgauGGCCggCGg- -3' miRNA: 3'- caUGGGCUCUGGa----ACCC---CCGGa-GCag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 168527 | 0.73 | 0.397277 |
Target: 5'- -aGgCCG-GGCCUccccUGGGGGCCUCGg- -3' miRNA: 3'- caUgGGCuCUGGA----ACCCCCGGAGCag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 167654 | 0.69 | 0.6102 |
Target: 5'- cGUGCCgGGGGCCc-GGGGGCg-UGUCc -3' miRNA: 3'- -CAUGGgCUCUGGaaCCCCCGgaGCAG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 43229 | 0.68 | 0.639986 |
Target: 5'- cGUGCagCG-GACCuUUGGGGuGCCUCGg- -3' miRNA: 3'- -CAUGg-GCuCUGG-AACCCC-CGGAGCag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 167405 | 0.69 | 0.600294 |
Target: 5'- -gGgCCGGGGCCUggcGGGGGCCagCG-Cg -3' miRNA: 3'- caUgGGCUCUGGAa--CCCCCGGa-GCaG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 47871 | 0.69 | 0.579569 |
Target: 5'- -cGCCCG-GACC-UGGGccgccucGGCCUCGgUCa -3' miRNA: 3'- caUGGGCuCUGGaACCC-------CCGGAGC-AG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 48554 | 0.71 | 0.503432 |
Target: 5'- cGUugCCGccucGACCUUGgaaucauccGGGGCCUCGg- -3' miRNA: 3'- -CAugGGCu---CUGGAAC---------CCCCGGAGCag -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 146847 | 0.73 | 0.405571 |
Target: 5'- -aGCCCG-GGCCUggcucGGGGCCgCGUCa -3' miRNA: 3'- caUGGGCuCUGGAac---CCCCGGaGCAG- -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 135922 | 0.68 | 0.649912 |
Target: 5'- -aGCUCGGGGCC--GGGGGCCggGUg -3' miRNA: 3'- caUGGGCUCUGGaaCCCCCGGagCAg -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 135644 | 0.68 | 0.649912 |
Target: 5'- -aGCUCGGGGCC--GGGGGCCggGUg -3' miRNA: 3'- caUGGGCUCUGGaaCCCCCGGagCAg -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 135272 | 0.68 | 0.649912 |
Target: 5'- -aGCUCGGGGCC--GGGGGCCggGUg -3' miRNA: 3'- caUGGGCUCUGGaaCCCCCGGagCAg -5' |
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28730 | 3' | -59.6 | NC_006146.1 | + | 137723 | 0.68 | 0.643957 |
Target: 5'- gGUGCCCGggccuacccgguucuGGAgCUccUGGGGGUccgCUCGUCc -3' miRNA: 3'- -CAUGGGC---------------UCUgGA--ACCCCCG---GAGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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