miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28730 3' -59.6 NC_006146.1 + 31509 0.69 0.620122
Target:  5'- --cCCCGGcGCCgUGGGGGCCUUcUCc -3'
miRNA:   3'- cauGGGCUcUGGaACCCCCGGAGcAG- -5'
28730 3' -59.6 NC_006146.1 + 34042 0.66 0.774832
Target:  5'- gGU-CCCGGGGCCUaugccggccGGGGGUCcCGUg -3'
miRNA:   3'- -CAuGGGCUCUGGAa--------CCCCCGGaGCAg -5'
28730 3' -59.6 NC_006146.1 + 38364 0.67 0.728184
Target:  5'- -gACCCGAGGCCUUcGaGGCCaCGUa -3'
miRNA:   3'- caUGGGCUCUGGAAcCcCCGGaGCAg -5'
28730 3' -59.6 NC_006146.1 + 40878 0.68 0.639986
Target:  5'- gGU-CCgGAGACggagccGGGGCCUCGUCu -3'
miRNA:   3'- -CAuGGgCUCUGgaac--CCCCGGAGCAG- -5'
28730 3' -59.6 NC_006146.1 + 41048 0.72 0.457534
Target:  5'- cGU-CCgCGGcGGCCcUGGGGGCCUCGg- -3'
miRNA:   3'- -CAuGG-GCU-CUGGaACCCCCGGAGCag -5'
28730 3' -59.6 NC_006146.1 + 41844 0.69 0.589422
Target:  5'- -cACCCG-GGCCgUGgccaggggcuaccGGGGCCUCGUg -3'
miRNA:   3'- caUGGGCuCUGGaAC-------------CCCCGGAGCAg -5'
28730 3' -59.6 NC_006146.1 + 43229 0.68 0.639986
Target:  5'- cGUGCagCG-GACCuUUGGGGuGCCUCGg- -3'
miRNA:   3'- -CAUGg-GCuCUGG-AACCCC-CGGAGCag -5'
28730 3' -59.6 NC_006146.1 + 46630 0.68 0.649912
Target:  5'- -cAUCa-GGGCCUUGGGGGCCgagaCGUa -3'
miRNA:   3'- caUGGgcUCUGGAACCCCCGGa---GCAg -5'
28730 3' -59.6 NC_006146.1 + 47871 0.69 0.579569
Target:  5'- -cGCCCG-GACC-UGGGccgccucGGCCUCGgUCa -3'
miRNA:   3'- caUGGGCuCUGGaACCC-------CCGGAGC-AG- -5'
28730 3' -59.6 NC_006146.1 + 48554 0.71 0.503432
Target:  5'- cGUugCCGccucGACCUUGgaaucauccGGGGCCUCGg- -3'
miRNA:   3'- -CAugGGCu---CUGGAAC---------CCCCGGAGCag -5'
28730 3' -59.6 NC_006146.1 + 50814 0.7 0.551218
Target:  5'- gGU-CCCaggggGGGAuCCUUGGGGGCUcCGUCu -3'
miRNA:   3'- -CAuGGG-----CUCU-GGAACCCCCGGaGCAG- -5'
28730 3' -59.6 NC_006146.1 + 52396 0.67 0.718586
Target:  5'- aGUACgCCGAGuACg-UGGGGGCC--GUCa -3'
miRNA:   3'- -CAUG-GGCUC-UGgaACCCCCGGagCAG- -5'
28730 3' -59.6 NC_006146.1 + 53194 0.68 0.689407
Target:  5'- -gGCCCc-GGCCUUGGGGGgCggCGUg -3'
miRNA:   3'- caUGGGcuCUGGAACCCCCgGa-GCAg -5'
28730 3' -59.6 NC_006146.1 + 53461 0.7 0.560951
Target:  5'- cUGCCCGGGAggcgcGGGuGCCUCGUCg -3'
miRNA:   3'- cAUGGGCUCUggaacCCC-CGGAGCAG- -5'
28730 3' -59.6 NC_006146.1 + 58629 0.67 0.699189
Target:  5'- gGUGCCCGGGcAUCUUcacGGGGCUcuUUGUCc -3'
miRNA:   3'- -CAUGGGCUC-UGGAAc--CCCCGG--AGCAG- -5'
28730 3' -59.6 NC_006146.1 + 69848 0.67 0.699189
Target:  5'- -aGCCCGuGGCCcUGGGaGGUCgggCGUa -3'
miRNA:   3'- caUGGGCuCUGGaACCC-CCGGa--GCAg -5'
28730 3' -59.6 NC_006146.1 + 70042 0.81 0.136031
Target:  5'- -gACCCGAGACCUUccGGcGGGCCUUGaUCa -3'
miRNA:   3'- caUGGGCUCUGGAA--CC-CCCGGAGC-AG- -5'
28730 3' -59.6 NC_006146.1 + 71248 0.67 0.708919
Target:  5'- --uCCUGGGGCCUggcgggGGGcGGCCUCu-- -3'
miRNA:   3'- cauGGGCUCUGGAa-----CCC-CCGGAGcag -5'
28730 3' -59.6 NC_006146.1 + 71839 0.69 0.630053
Target:  5'- -aGCCgGAGACCacugUGGGGGUgaggUGUCg -3'
miRNA:   3'- caUGGgCUCUGGa---ACCCCCGga--GCAG- -5'
28730 3' -59.6 NC_006146.1 + 71861 0.73 0.397277
Target:  5'- -cACCCGccGGGCCcugGGGGGCCUCu-- -3'
miRNA:   3'- caUGGGC--UCUGGaa-CCCCCGGAGcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.