miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28730 3' -59.6 NC_006146.1 + 41048 0.72 0.457534
Target:  5'- cGU-CCgCGGcGGCCcUGGGGGCCUCGg- -3'
miRNA:   3'- -CAuGG-GCU-CUGGaACCCCCGGAGCag -5'
28730 3' -59.6 NC_006146.1 + 145267 0.72 0.457534
Target:  5'- -aGCgCCGuGAUCUUggagcugagGGGGGCCUCGUa -3'
miRNA:   3'- caUG-GGCuCUGGAA---------CCCCCGGAGCAg -5'
28730 3' -59.6 NC_006146.1 + 48554 0.71 0.503432
Target:  5'- cGUugCCGccucGACCUUGgaaucauccGGGGCCUCGg- -3'
miRNA:   3'- -CAugGGCu---CUGGAAC---------CCCCGGAGCag -5'
28730 3' -59.6 NC_006146.1 + 14671 0.71 0.512855
Target:  5'- --cCCCGuccacGGCCgaGGGGGCCcgCGUCu -3'
miRNA:   3'- cauGGGCu----CUGGaaCCCCCGGa-GCAG- -5'
28730 3' -59.6 NC_006146.1 + 12167 0.7 0.551218
Target:  5'- -gACCCcuacguGAUCUcGGGGGCCUCGg- -3'
miRNA:   3'- caUGGGcu----CUGGAaCCCCCGGAGCag -5'
28730 3' -59.6 NC_006146.1 + 50814 0.7 0.551218
Target:  5'- gGU-CCCaggggGGGAuCCUUGGGGGCUcCGUCu -3'
miRNA:   3'- -CAuGGG-----CUCU-GGAACCCCCGGaGCAG- -5'
28730 3' -59.6 NC_006146.1 + 53461 0.7 0.560951
Target:  5'- cUGCCCGGGAggcgcGGGuGCCUCGUCg -3'
miRNA:   3'- cAUGGGCUCUggaacCCC-CGGAGCAG- -5'
28730 3' -59.6 NC_006146.1 + 81534 0.7 0.560951
Target:  5'- -cACCaCGAGACCUc--GGGCCUCGg- -3'
miRNA:   3'- caUGG-GCUCUGGAaccCCCGGAGCag -5'
28730 3' -59.6 NC_006146.1 + 155794 0.7 0.570732
Target:  5'- -cGCUCGGuGGCCcUGGGGGCCaccgaGUCa -3'
miRNA:   3'- caUGGGCU-CUGGaACCCCCGGag---CAG- -5'
28730 3' -59.6 NC_006146.1 + 47871 0.69 0.579569
Target:  5'- -cGCCCG-GACC-UGGGccgccucGGCCUCGgUCa -3'
miRNA:   3'- caUGGGCuCUGGaACCC-------CCGGAGC-AG- -5'
28730 3' -59.6 NC_006146.1 + 41844 0.69 0.589422
Target:  5'- -cACCCG-GGCCgUGgccaggggcuaccGGGGCCUCGUg -3'
miRNA:   3'- caUGGGCuCUGGaAC-------------CCCCGGAGCAg -5'
28730 3' -59.6 NC_006146.1 + 164177 0.69 0.590409
Target:  5'- -cACCCGggucaccuuccGGACCUUGuGGGCCUUGa- -3'
miRNA:   3'- caUGGGC-----------UCUGGAACcCCCGGAGCag -5'
28730 3' -59.6 NC_006146.1 + 167405 0.69 0.600294
Target:  5'- -gGgCCGGGGCCUggcGGGGGCCagCG-Cg -3'
miRNA:   3'- caUgGGCUCUGGAa--CCCCCGGa-GCaG- -5'
28730 3' -59.6 NC_006146.1 + 170200 0.69 0.600294
Target:  5'- -gGgCCGGGGCCUggcGGGGGCCagCG-Cg -3'
miRNA:   3'- caUgGGCUCUGGAa--CCCCCGGa-GCaG- -5'
28730 3' -59.6 NC_006146.1 + 168337 0.69 0.600294
Target:  5'- -gGgCCGGGGCCUggcGGGGGCCagCG-Cg -3'
miRNA:   3'- caUgGGCUCUGGAa--CCCCCGGa-GCaG- -5'
28730 3' -59.6 NC_006146.1 + 169269 0.69 0.600294
Target:  5'- -gGgCCGGGGCCUggcGGGGGCCagCG-Cg -3'
miRNA:   3'- caUgGGCUCUGGAa--CCCCCGGa-GCaG- -5'
28730 3' -59.6 NC_006146.1 + 167654 0.69 0.6102
Target:  5'- cGUGCCgGGGGCCc-GGGGGCg-UGUCc -3'
miRNA:   3'- -CAUGGgCUCUGGaaCCCCCGgaGCAG- -5'
28730 3' -59.6 NC_006146.1 + 162396 0.69 0.6102
Target:  5'- -cGCCCGGGACCccGGuGGGCCagGa- -3'
miRNA:   3'- caUGGGCUCUGGaaCC-CCCGGagCag -5'
28730 3' -59.6 NC_006146.1 + 31509 0.69 0.620122
Target:  5'- --cCCCGGcGCCgUGGGGGCCUUcUCc -3'
miRNA:   3'- cauGGGCUcUGGaACCCCCGGAGcAG- -5'
28730 3' -59.6 NC_006146.1 + 71839 0.69 0.630053
Target:  5'- -aGCCgGAGACCacugUGGGGGUgaggUGUCg -3'
miRNA:   3'- caUGGgCUCUGGa---ACCCCCGga--GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.