miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28730 3' -59.6 NC_006146.1 + 157893 0.66 0.792709
Target:  5'- -gGCUCGAGAgCUUGGuguccgggaagaGGGUCUUGUg -3'
miRNA:   3'- caUGGGCUCUgGAACC------------CCCGGAGCAg -5'
28730 3' -59.6 NC_006146.1 + 157627 0.66 0.774832
Target:  5'- -gACCCGAGggGCUcUGGGGcGCCg-GUCc -3'
miRNA:   3'- caUGGGCUC--UGGaACCCC-CGGagCAG- -5'
28730 3' -59.6 NC_006146.1 + 156023 0.72 0.448623
Target:  5'- -gGCCUGGGGCCUcGGaGGGCCUgGa- -3'
miRNA:   3'- caUGGGCUCUGGAaCC-CCCGGAgCag -5'
28730 3' -59.6 NC_006146.1 + 155867 0.82 0.113999
Target:  5'- -gGCCCGAGACC-UGGGGGCC-CGg- -3'
miRNA:   3'- caUGGGCUCUGGaACCCCCGGaGCag -5'
28730 3' -59.6 NC_006146.1 + 155794 0.7 0.570732
Target:  5'- -cGCUCGGuGGCCcUGGGGGCCaccgaGUCa -3'
miRNA:   3'- caUGGGCU-CUGGaACCCCCGGag---CAG- -5'
28730 3' -59.6 NC_006146.1 + 154549 0.66 0.774832
Target:  5'- -gACCCGAGggGCUcUGGGGcGCCg-GUCc -3'
miRNA:   3'- caUGGGCUC--UGGaACCCC-CGGagCAG- -5'
28730 3' -59.6 NC_006146.1 + 152945 0.72 0.448623
Target:  5'- -gGCCUGGGGCCUcGGaGGGCCUgGa- -3'
miRNA:   3'- caUGGGCUCUGGAaCC-CCCGGAgCag -5'
28730 3' -59.6 NC_006146.1 + 152789 0.82 0.113999
Target:  5'- -gGCCCGAGACC-UGGGGGCC-CGg- -3'
miRNA:   3'- caUGGGCUCUGGaACCCCCGGaGCag -5'
28730 3' -59.6 NC_006146.1 + 151629 0.67 0.699189
Target:  5'- ---aCCGAGACCcggcaGGGGGUCUUgcgGUCa -3'
miRNA:   3'- caugGGCUCUGGaa---CCCCCGGAG---CAG- -5'
28730 3' -59.6 NC_006146.1 + 151471 0.66 0.774832
Target:  5'- -gACCCGAGggGCUcUGGGGcGCCg-GUCc -3'
miRNA:   3'- caUGGGCUC--UGGaACCCC-CGGagCAG- -5'
28730 3' -59.6 NC_006146.1 + 149867 0.72 0.448623
Target:  5'- -gGCCUGGGGCCUcGGaGGGCCUgGa- -3'
miRNA:   3'- caUGGGCUCUGGAaCC-CCCGGAgCag -5'
28730 3' -59.6 NC_006146.1 + 149711 0.82 0.113999
Target:  5'- -gGCCCGAGACC-UGGGGGCC-CGg- -3'
miRNA:   3'- caUGGGCUCUGGaACCCCCGGaGCag -5'
28730 3' -59.6 NC_006146.1 + 148393 0.66 0.774832
Target:  5'- -gACCCGAGggGCUcUGGGGcGCCg-GUCc -3'
miRNA:   3'- caUGGGCUC--UGGaACCCC-CGGagCAG- -5'
28730 3' -59.6 NC_006146.1 + 147430 0.67 0.699189
Target:  5'- -aGCCCGuaccuGGCCacGGccaGGGCCUCGUa -3'
miRNA:   3'- caUGGGCu----CUGGaaCC---CCCGGAGCAg -5'
28730 3' -59.6 NC_006146.1 + 146847 0.73 0.405571
Target:  5'- -aGCCCG-GGCCUggcucGGGGCCgCGUCa -3'
miRNA:   3'- caUGGGCuCUGGAac---CCCCGGaGCAG- -5'
28730 3' -59.6 NC_006146.1 + 146789 0.72 0.448623
Target:  5'- -gGCCUGGGGCCUcGGaGGGCCUgGa- -3'
miRNA:   3'- caUGGGCUCUGGAaCC-CCCGGAgCag -5'
28730 3' -59.6 NC_006146.1 + 146634 0.82 0.113999
Target:  5'- -gGCCCGAGACC-UGGGGGCC-CGg- -3'
miRNA:   3'- caUGGGCUCUGGaACCCCCGGaGCag -5'
28730 3' -59.6 NC_006146.1 + 145315 0.66 0.774832
Target:  5'- -gACCCGAGggGCUcUGGGGcGCCg-GUCc -3'
miRNA:   3'- caUGGGCUC--UGGaACCCC-CGGagCAG- -5'
28730 3' -59.6 NC_006146.1 + 145267 0.72 0.457534
Target:  5'- -aGCgCCGuGAUCUUggagcugagGGGGGCCUCGUa -3'
miRNA:   3'- caUG-GGCuCUGGAA---------CCCCCGGAGCAg -5'
28730 3' -59.6 NC_006146.1 + 143711 0.72 0.457534
Target:  5'- -aGCCUGGGGCCUcGGaGGGCCUgGa- -3'
miRNA:   3'- caUGGGCUCUGGAaCC-CCCGGAgCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.