miRNA display CGI


Results 1 - 20 of 123 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28730 3' -59.6 NC_006146.1 + 170390 0.73 0.397277
Target:  5'- -aGgCCG-GGCCUccccUGGGGGCCUCGg- -3'
miRNA:   3'- caUgGGCuCUGGA----ACCCCCGGAGCag -5'
28730 3' -59.6 NC_006146.1 + 170200 0.69 0.600294
Target:  5'- -gGgCCGGGGCCUggcGGGGGCCagCG-Cg -3'
miRNA:   3'- caUgGGCUCUGGAa--CCCCCGGa-GCaG- -5'
28730 3' -59.6 NC_006146.1 + 170066 0.68 0.639986
Target:  5'- -gGCCCGGGGCCgcgcgUGGGgauGGCCggCGg- -3'
miRNA:   3'- caUGGGCUCUGGa----ACCC---CCGGa-GCag -5'
28730 3' -59.6 NC_006146.1 + 169459 0.73 0.397277
Target:  5'- -aGgCCG-GGCCUccccUGGGGGCCUCGg- -3'
miRNA:   3'- caUgGGCuCUGGA----ACCCCCGGAGCag -5'
28730 3' -59.6 NC_006146.1 + 169269 0.69 0.600294
Target:  5'- -gGgCCGGGGCCUggcGGGGGCCagCG-Cg -3'
miRNA:   3'- caUgGGCUCUGGAa--CCCCCGGa-GCaG- -5'
28730 3' -59.6 NC_006146.1 + 169169 0.66 0.783835
Target:  5'- -gGgCCGGcGCCUgcaggGGGGGCCggcggggCGUCc -3'
miRNA:   3'- caUgGGCUcUGGAa----CCCCCGGa------GCAG- -5'
28730 3' -59.6 NC_006146.1 + 169134 0.68 0.639986
Target:  5'- -gGCCCGGGGCCgcgcgUGGGgauGGCCggCGg- -3'
miRNA:   3'- caUGGGCUCUGGa----ACCC---CCGGa-GCag -5'
28730 3' -59.6 NC_006146.1 + 168527 0.73 0.397277
Target:  5'- -aGgCCG-GGCCUccccUGGGGGCCUCGg- -3'
miRNA:   3'- caUgGGCuCUGGA----ACCCCCGGAGCag -5'
28730 3' -59.6 NC_006146.1 + 168337 0.69 0.600294
Target:  5'- -gGgCCGGGGCCUggcGGGGGCCagCG-Cg -3'
miRNA:   3'- caUgGGCUCUGGAa--CCCCCGGa-GCaG- -5'
28730 3' -59.6 NC_006146.1 + 168237 0.66 0.783835
Target:  5'- -gGgCCGGcGCCUgcaggGGGGGCCggcggggCGUCc -3'
miRNA:   3'- caUgGGCUcUGGAa----CCCCCGGa------GCAG- -5'
28730 3' -59.6 NC_006146.1 + 168202 0.68 0.639986
Target:  5'- -gGCCCGGGGCCgcgcgUGGGgauGGCCggCGg- -3'
miRNA:   3'- caUGGGCUCUGGa----ACCC---CCGGa-GCag -5'
28730 3' -59.6 NC_006146.1 + 167654 0.69 0.6102
Target:  5'- cGUGCCgGGGGCCc-GGGGGCg-UGUCc -3'
miRNA:   3'- -CAUGGgCUCUGGaaCCCCCGgaGCAG- -5'
28730 3' -59.6 NC_006146.1 + 167595 0.73 0.397277
Target:  5'- -aGgCCG-GGCCUccccUGGGGGCCUCGg- -3'
miRNA:   3'- caUgGGCuCUGGA----ACCCCCGGAGCag -5'
28730 3' -59.6 NC_006146.1 + 167405 0.69 0.600294
Target:  5'- -gGgCCGGGGCCUggcGGGGGCCagCG-Cg -3'
miRNA:   3'- caUgGGCUCUGGAa--CCCCCGGa-GCaG- -5'
28730 3' -59.6 NC_006146.1 + 167305 0.66 0.783835
Target:  5'- -gGgCCGGcGCCUgcaggGGGGGCCggcggggCGUCc -3'
miRNA:   3'- caUgGGCUcUGGAa----CCCCCGGa------GCAG- -5'
28730 3' -59.6 NC_006146.1 + 167270 0.68 0.639986
Target:  5'- -gGCCCGGGGCCgcgcgUGGGgauGGCCggCGg- -3'
miRNA:   3'- caUGGGCUCUGGa----ACCC---CCGGa-GCag -5'
28730 3' -59.6 NC_006146.1 + 166995 1.09 0.001483
Target:  5'- gGUACCCGAGACCUUGGGGGCCUCGUCg -3'
miRNA:   3'- -CAUGGGCUCUGGAACCCCCGGAGCAG- -5'
28730 3' -59.6 NC_006146.1 + 164177 0.69 0.590409
Target:  5'- -cACCCGggucaccuuccGGACCUUGuGGGCCUUGa- -3'
miRNA:   3'- caUGGGC-----------UCUGGAACcCCCGGAGCag -5'
28730 3' -59.6 NC_006146.1 + 163802 0.67 0.728184
Target:  5'- -aGCCUG-GGCCUUGGcGGGCCa---- -3'
miRNA:   3'- caUGGGCuCUGGAACC-CCCGGagcag -5'
28730 3' -59.6 NC_006146.1 + 162396 0.69 0.6102
Target:  5'- -cGCCCGGGACCccGGuGGGCCagGa- -3'
miRNA:   3'- caUGGGCUCUGGaaCC-CCCGGagCag -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.