miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28730 5' -55 NC_006146.1 + 114300 0.75 0.527665
Target:  5'- aCGCCggcgagGAGACCGGCGGCgggCUCGg-- -3'
miRNA:   3'- aGCGG------CUCUGGUCGUCGaa-GAGCaag -5'
28730 5' -55 NC_006146.1 + 114929 0.65 0.9505
Target:  5'- aCGCCGAGACCaaccgcuaccccugGGCGGCgauggCGg-- -3'
miRNA:   3'- aGCGGCUCUGG--------------UCGUCGaaga-GCaag -5'
28730 5' -55 NC_006146.1 + 115187 0.68 0.892396
Target:  5'- aCGCgGAGGCCAGCGGCgggCa----- -3'
miRNA:   3'- aGCGgCUCUGGUCGUCGaa-Gagcaag -5'
28730 5' -55 NC_006146.1 + 115685 0.68 0.892395
Target:  5'- -aGCUGAGACCGGUgucgauggaGGCcaUCUCGUg- -3'
miRNA:   3'- agCGGCUCUGGUCG---------UCGa-AGAGCAag -5'
28730 5' -55 NC_006146.1 + 126027 0.68 0.885581
Target:  5'- aUCG-CGAGcCCAGgGGCUUCUCa--- -3'
miRNA:   3'- -AGCgGCUCuGGUCgUCGAAGAGcaag -5'
28730 5' -55 NC_006146.1 + 141011 0.68 0.871279
Target:  5'- gCGCCGGuGACCugauAGCAGCggUCUCa--- -3'
miRNA:   3'- aGCGGCU-CUGG----UCGUCGa-AGAGcaag -5'
28730 5' -55 NC_006146.1 + 147462 0.72 0.659868
Target:  5'- -gGCCGAGACgGGCAGCcggagCUUGUg- -3'
miRNA:   3'- agCGGCUCUGgUCGUCGaa---GAGCAag -5'
28730 5' -55 NC_006146.1 + 150186 0.67 0.917321
Target:  5'- cUCGCa-GGccGCCAGCAGCUUCUUa--- -3'
miRNA:   3'- -AGCGgcUC--UGGUCGUCGAAGAGcaag -5'
28730 5' -55 NC_006146.1 + 158594 0.78 0.381066
Target:  5'- -aGCCGAGAcagccgcuCCAGCAGgUUCUgGUUCa -3'
miRNA:   3'- agCGGCUCU--------GGUCGUCgAAGAgCAAG- -5'
28730 5' -55 NC_006146.1 + 159326 0.66 0.933508
Target:  5'- -aGuuGAGGCUGGcCGGCgUCUCGUg- -3'
miRNA:   3'- agCggCUCUGGUC-GUCGaAGAGCAag -5'
28730 5' -55 NC_006146.1 + 167029 1.11 0.00297
Target:  5'- cUCGCCGAGACCAGCAGCUUCUCGUUCa -3'
miRNA:   3'- -AGCGGCUCUGGUCGUCGAAGAGCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.