Results 1 - 20 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28731 | 3' | -57.1 | NC_006146.1 | + | 166644 | 0.97 | 0.017768 |
Target: 5'- uCUGCAGUACCGGCGUGAUCAGGgagcGGAGa -3' miRNA: 3'- -GACGUCAUGGCCGCACUAGUCC----CCUC- -5' |
|||||||
28731 | 3' | -57.1 | NC_006146.1 | + | 40002 | 0.73 | 0.488598 |
Target: 5'- -cGUAGUgGCCGGUGUGGgcguagCAGGGGGc -3' miRNA: 3'- gaCGUCA-UGGCCGCACUa-----GUCCCCUc -5' |
|||||||
28731 | 3' | -57.1 | NC_006146.1 | + | 169161 | 0.73 | 0.507582 |
Target: 5'- -gGCGGgagggGCCGGCGccugCAGGGGGGg -3' miRNA: 3'- gaCGUCa----UGGCCGCacuaGUCCCCUC- -5' |
|||||||
28731 | 3' | -57.1 | NC_006146.1 | + | 168229 | 0.73 | 0.507582 |
Target: 5'- -gGCGGgagggGCCGGCGccugCAGGGGGGg -3' miRNA: 3'- gaCGUCa----UGGCCGCacuaGUCCCCUC- -5' |
|||||||
28731 | 3' | -57.1 | NC_006146.1 | + | 167297 | 0.73 | 0.507582 |
Target: 5'- -gGCGGgagggGCCGGCGccugCAGGGGGGg -3' miRNA: 3'- gaCGUCa----UGGCCGCacuaGUCCCCUC- -5' |
|||||||
28731 | 3' | -57.1 | NC_006146.1 | + | 51192 | 0.73 | 0.525901 |
Target: 5'- uCUGCGG-GCUGGCGUGGUaCAGGGcauccacGAGg -3' miRNA: 3'- -GACGUCaUGGCCGCACUA-GUCCC-------CUC- -5' |
|||||||
28731 | 3' | -57.1 | NC_006146.1 | + | 170093 | 0.73 | 0.526872 |
Target: 5'- -gGCGGgagggGCCGGCGccg-CAGGGGGGg -3' miRNA: 3'- gaCGUCa----UGGCCGCacuaGUCCCCUC- -5' |
|||||||
28731 | 3' | -57.1 | NC_006146.1 | + | 128787 | 0.71 | 0.595206 |
Target: 5'- -aGCAGgGCCGaaGCGUGAUCGGccacacaGGGAGg -3' miRNA: 3'- gaCGUCaUGGC--CGCACUAGUC-------CCCUC- -5' |
|||||||
28731 | 3' | -57.1 | NC_006146.1 | + | 117565 | 0.71 | 0.60627 |
Target: 5'- gCUGUucagGGUauggGCCGGCGUGuggaGUCGGGGGuGa -3' miRNA: 3'- -GACG----UCA----UGGCCGCAC----UAGUCCCCuC- -5' |
|||||||
28731 | 3' | -57.1 | NC_006146.1 | + | 66507 | 0.71 | 0.640567 |
Target: 5'- aUGCAccgGCCGGCGUGAUaCacgccgcugucaaacAGGGGGGc -3' miRNA: 3'- gACGUca-UGGCCGCACUA-G---------------UCCCCUC- -5' |
|||||||
28731 | 3' | -57.1 | NC_006146.1 | + | 43599 | 0.7 | 0.66676 |
Target: 5'- -gGCGGgagGCCGGguCG-GGUCGGGGGAa -3' miRNA: 3'- gaCGUCa--UGGCC--GCaCUAGUCCCCUc -5' |
|||||||
28731 | 3' | -57.1 | NC_006146.1 | + | 102572 | 0.7 | 0.68679 |
Target: 5'- -aGCAGguccgaGCCGaGCGUGcagGUCGGGGGGu -3' miRNA: 3'- gaCGUCa-----UGGC-CGCAC---UAGUCCCCUc -5' |
|||||||
28731 | 3' | -57.1 | NC_006146.1 | + | 37653 | 0.69 | 0.745543 |
Target: 5'- uUGguGUAUUGGUGuUGAgggUAGGGGGGc -3' miRNA: 3'- gACguCAUGGCCGC-ACUa--GUCCCCUC- -5' |
|||||||
28731 | 3' | -57.1 | NC_006146.1 | + | 106645 | 0.68 | 0.809563 |
Target: 5'- cCUGCuGcgGCCGGC-UGGUCAGGGc-- -3' miRNA: 3'- -GACGuCa-UGGCCGcACUAGUCCCcuc -5' |
|||||||
28731 | 3' | -57.1 | NC_006146.1 | + | 14619 | 0.67 | 0.850775 |
Target: 5'- gUGCccUGCUGGCGcUGcgUGGGGGAGc -3' miRNA: 3'- gACGucAUGGCCGC-ACuaGUCCCCUC- -5' |
|||||||
28731 | 3' | -57.1 | NC_006146.1 | + | 50710 | 0.67 | 0.850775 |
Target: 5'- -gGCAGgccugaaaGCCGGCGuUGAgCGGGGGcGa -3' miRNA: 3'- gaCGUCa-------UGGCCGC-ACUaGUCCCCuC- -5' |
|||||||
28731 | 3' | -57.1 | NC_006146.1 | + | 149780 | 0.67 | 0.858466 |
Target: 5'- -gGCGGaGCCGGCGaUGA-CGGuGGAGg -3' miRNA: 3'- gaCGUCaUGGCCGC-ACUaGUCcCCUC- -5' |
|||||||
28731 | 3' | -57.1 | NC_006146.1 | + | 155936 | 0.67 | 0.858466 |
Target: 5'- -gGCGGaGCCGGCGaUGA-CGGuGGAGg -3' miRNA: 3'- gaCGUCaUGGCCGC-ACUaGUCcCCUC- -5' |
|||||||
28731 | 3' | -57.1 | NC_006146.1 | + | 143625 | 0.67 | 0.858466 |
Target: 5'- -gGCGGaGCCGGCGaUGA-CGGuGGAGg -3' miRNA: 3'- gaCGUCaUGGCCGC-ACUaGUCcCCUC- -5' |
|||||||
28731 | 3' | -57.1 | NC_006146.1 | + | 152858 | 0.67 | 0.858466 |
Target: 5'- -gGCGGaGCCGGCGaUGA-CGGuGGAGg -3' miRNA: 3'- gaCGUCaUGGCCGC-ACUaGUCcCCUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home