Results 41 - 53 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28733 | 3' | -55.4 | NC_006146.1 | + | 51660 | 0.71 | 0.67147 |
Target: 5'- gGGGCCAGG-GC-CGGU-GCcgGGACUCa -3' miRNA: 3'- aCCUGGUCCaCGaGUCAuCG--UCUGAG- -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 155044 | 0.71 | 0.691968 |
Target: 5'- gGGACCGGGUGUUgggaccUGGUGGCGcccgccGGCUCc -3' miRNA: 3'- aCCUGGUCCACGA------GUCAUCGU------CUGAG- -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 151966 | 0.71 | 0.691968 |
Target: 5'- gGGACCGGGUGUUgggaccUGGUGGCGcccgccGGCUCc -3' miRNA: 3'- aCCUGGUCCACGA------GUCAUCGU------CUGAG- -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 99599 | 0.71 | 0.67147 |
Target: 5'- gGGGCCGcGGUGCUCugcGUAGCAcgaGGCg- -3' miRNA: 3'- aCCUGGU-CCACGAGu--CAUCGU---CUGag -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 148888 | 0.71 | 0.691968 |
Target: 5'- gGGACCGGGUGUUgggaccUGGUGGCGcccgccGGCUCc -3' miRNA: 3'- aCCUGGUCCACGA------GUCAUCGU------CUGAG- -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 145810 | 0.71 | 0.691968 |
Target: 5'- gGGACCGGGUGUUgggaccUGGUGGCGcccgccGGCUCc -3' miRNA: 3'- aCCUGGUCCACGA------GUCAUCGU------CUGAG- -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 142732 | 0.71 | 0.691968 |
Target: 5'- gGGACCGGGUGUUgggaccUGGUGGCGcccgccGGCUCc -3' miRNA: 3'- aCCUGGUCCACGA------GUCAUCGU------CUGAG- -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 50170 | 0.72 | 0.650841 |
Target: 5'- aGGACCAGGgggGCguuugCAcuuGcGGCGGGCUCg -3' miRNA: 3'- aCCUGGUCCa--CGa----GU---CaUCGUCUGAG- -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 67908 | 0.72 | 0.639465 |
Target: 5'- cUGGGCCucgugggagccgaAGGUGCUCAGgaaccaccgGGCAGAgaCg -3' miRNA: 3'- -ACCUGG-------------UCCACGAGUCa--------UCGUCUgaG- -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 44557 | 0.73 | 0.568364 |
Target: 5'- gGGGCCGGG-GCUCcgGGUGGCuGGCg- -3' miRNA: 3'- aCCUGGUCCaCGAG--UCAUCGuCUGag -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 123709 | 0.76 | 0.414716 |
Target: 5'- gGGGCCuGGcGCUCGGggcggcGGCGGGCUCu -3' miRNA: 3'- aCCUGGuCCaCGAGUCa-----UCGUCUGAG- -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 125730 | 0.76 | 0.414716 |
Target: 5'- gGaGGCCAGGUGCUCaaAGgaccAGCGGGCUUg -3' miRNA: 3'- aC-CUGGUCCACGAG--UCa---UCGUCUGAG- -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 166151 | 1.1 | 0.002482 |
Target: 5'- gUGGACCAGGUGCUCAGUAGCAGACUCa -3' miRNA: 3'- -ACCUGGUCCACGAGUCAUCGUCUGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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