miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28733 3' -55.4 NC_006146.1 + 145667 0.68 0.825517
Target:  5'- gGGGCCAGG-GCcucCAGaGGCAccaGGCUCa -3'
miRNA:   3'- aCCUGGUCCaCGa--GUCaUCGU---CUGAG- -5'
28733 3' -55.4 NC_006146.1 + 145391 0.68 0.853565
Target:  5'- aGcGCCAGGUGCUCuugggguagggguuGUAGCGGAaggCa -3'
miRNA:   3'- aCcUGGUCCACGAGu-------------CAUCGUCUga-G- -5'
28733 3' -55.4 NC_006146.1 + 144566 0.66 0.90105
Target:  5'- gGGACaGGGUGgaCGG-GGCuGGACUCg -3'
miRNA:   3'- aCCUGgUCCACgaGUCaUCG-UCUGAG- -5'
28733 3' -55.4 NC_006146.1 + 142732 0.71 0.691968
Target:  5'- gGGACCGGGUGUUgggaccUGGUGGCGcccgccGGCUCc -3'
miRNA:   3'- aCCUGGUCCACGA------GUCAUCGU------CUGAG- -5'
28733 3' -55.4 NC_006146.1 + 142589 0.68 0.825517
Target:  5'- gGGGCCAGG-GCcucCAGaGGCAccaGGCUCa -3'
miRNA:   3'- aCCUGGUCCaCGa--GUCaUCGU---CUGAG- -5'
28733 3' -55.4 NC_006146.1 + 141488 0.66 0.90105
Target:  5'- gGGACaGGGUGgaCGG-GGCuGGACUCg -3'
miRNA:   3'- aCCUGgUCCACgaGUCaUCG-UCUGAG- -5'
28733 3' -55.4 NC_006146.1 + 132758 0.67 0.897144
Target:  5'- gGGGCCGGaUGCcgCGGUcccgcacggucgcuGCAGGCUCg -3'
miRNA:   3'- aCCUGGUCcACGa-GUCAu-------------CGUCUGAG- -5'
28733 3' -55.4 NC_006146.1 + 130953 0.66 0.919285
Target:  5'- gGGACCcgGGGUGCU----GGCGGAaCUCc -3'
miRNA:   3'- aCCUGG--UCCACGAgucaUCGUCU-GAG- -5'
28733 3' -55.4 NC_006146.1 + 127089 0.69 0.789887
Target:  5'- aGGGCCAGG-GCggagCGGUGGgaCAGGCa- -3'
miRNA:   3'- aCCUGGUCCaCGa---GUCAUC--GUCUGag -5'
28733 3' -55.4 NC_006146.1 + 125730 0.76 0.414716
Target:  5'- gGaGGCCAGGUGCUCaaAGgaccAGCGGGCUUg -3'
miRNA:   3'- aC-CUGGUCCACGAG--UCa---UCGUCUGAG- -5'
28733 3' -55.4 NC_006146.1 + 123709 0.76 0.414716
Target:  5'- gGGGCCuGGcGCUCGGggcggcGGCGGGCUCu -3'
miRNA:   3'- aCCUGGuCCaCGAGUCa-----UCGUCUGAG- -5'
28733 3' -55.4 NC_006146.1 + 108408 0.66 0.930227
Target:  5'- aGGGCCAGGUGCUgc-UGGCAcGAg-- -3'
miRNA:   3'- aCCUGGUCCACGAgucAUCGU-CUgag -5'
28733 3' -55.4 NC_006146.1 + 103580 0.69 0.789887
Target:  5'- cGGGCCuGGgccggGCUCAGc-GCGGACg- -3'
miRNA:   3'- aCCUGGuCCa----CGAGUCauCGUCUGag -5'
28733 3' -55.4 NC_006146.1 + 99791 0.66 0.924878
Target:  5'- gGGGCgCAGGUGuCUCGGaagGGCAccGGCg- -3'
miRNA:   3'- aCCUG-GUCCAC-GAGUCa--UCGU--CUGag -5'
28733 3' -55.4 NC_006146.1 + 99599 0.71 0.67147
Target:  5'- gGGGCCGcGGUGCUCugcGUAGCAcgaGGCg- -3'
miRNA:   3'- aCCUGGU-CCACGAGu--CAUCGU---CUGag -5'
28733 3' -55.4 NC_006146.1 + 67908 0.72 0.639465
Target:  5'- cUGGGCCucgugggagccgaAGGUGCUCAGgaaccaccgGGCAGAgaCg -3'
miRNA:   3'- -ACCUGG-------------UCCACGAGUCa--------UCGUCUgaG- -5'
28733 3' -55.4 NC_006146.1 + 65838 0.69 0.799035
Target:  5'- aUGGGCCAguGGUGaugUGGUgccgucccAGCGGACUCa -3'
miRNA:   3'- -ACCUGGU--CCACga-GUCA--------UCGUCUGAG- -5'
28733 3' -55.4 NC_006146.1 + 64241 0.67 0.894492
Target:  5'- cUGGGCCGGG-GCgggAGgGGCGuGGCUCg -3'
miRNA:   3'- -ACCUGGUCCaCGag-UCaUCGU-CUGAG- -5'
28733 3' -55.4 NC_006146.1 + 61974 0.66 0.930227
Target:  5'- gGGGCCguugAGGcccacgucaccUGCUCGGUcgcuGCuGACUCg -3'
miRNA:   3'- aCCUGG----UCC-----------ACGAGUCAu---CGuCUGAG- -5'
28733 3' -55.4 NC_006146.1 + 59251 0.7 0.751937
Target:  5'- aUGGGCCuGGGUGUUCAGggccUGGCcGACg- -3'
miRNA:   3'- -ACCUGG-UCCACGAGUC----AUCGuCUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.